Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1369 ATGAAGAACTGCGAGCTCTGCAAGGTTCCGGCGAGGACCTTCTGCGAGTCAGATCAGGCAAGCCTATGTTGGGAGTGCGACACCAAAGTTCACGGTGCCAACTTCTTGGTAGCCAGGCACACAAGGACCCTTCTCTGCCACGCTTGCCAGGCGCCTACGCCCTGGAAGGCTTCCGGCGCTAGGCTTGGCAACACTCTCTCCTTGTGCGACGCCTGCGCCGGCGGAACCAAGTTCGTCGCCGATCAAGGTGAAGAAGAGAGTGAAGCAGGCAATGACGATGATATATACACCGACGACGATGAGGATGATGATGAGGACGGCGATGAGGATGATGACGACGTTGGCGGCGATGAAGACGGTGATAACCAGGTTGTCCCTTGGTCCTCCACCGCGCCGCCACCGTCGGCTTCTAGTTCATCCAGCAGCGAAGAGTCGGTTAGCCGGTGCGATAACGGCGATGAGGGTGTTTCTTTGAAACGACGTCGTGAGGATCATGATTTTCAGAATTCGAACCACGGGGCATATCAACGGAGGCGCGGTGCAAAGTGGGGAGGAGAGGAGGTGGATTGGTTAGGATGCGGCGTGGAACCGCCGTTGAAGGTGTTGAAGCTGCGGCCATTGAGCGGCGGAGAGACGAGACCACCGTCGTCGCCTTAG 657 0.5784 MKNCELCKVPARTFCESDQASLCWECDTKVHGANFLVARHTRTLLCHACQAPTPWKASGARLGNTLSLCDACAGGTKFVADQGEEESEAGNDDDIYTDDDEDDDEDGDEDDDDVGGDEDGDNQVVPWSSTAPPPSASSSSSSEESVSRCDNGDEGVSLKRRREDHDFQNSNHGAYQRRRGAKWGGEEVDWLGCGVEPPLKVLKLRPLSGGETRPPSSP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1369 218 MobiDBLite consensus disorder prediction 147 172 - -
Lja3g1369 218 SMART bboxneu5 1 45 IPR000315 GO:0008270
Lja3g1369 218 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Lja3g1369 218 MobiDBLite consensus disorder prediction 85 119 - -
Lja3g1369 218 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 175 - -
Lja3g1369 218 MobiDBLite consensus disorder prediction 123 146 - -
Lja3g1369 218 MobiDBLite consensus disorder prediction 80 182 - -
Lja3g1369 218 CDD Bbox1_BBX-like 4 45 - -
Lja3g1369 218 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Lja3g1369 218 PANTHER - 1 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1369 Lja-Chr3 14305885 14307181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1369 2 134 C2C2-CO-like Transcription Factor Family AT4G27310 47.205 3.08e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja3g1369 zf-B_box 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1369 - - mtr:MTR_2g089310 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1369 3 14305885 14307181 Lja3g1369 3 14305885 14307181 ECH
Lja3g1369 3 14305885 14307181 Lja3g1369 3 14305885 14307181 PCT