Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1367 ATGAATCAATGGTGGTTCTGCAGGCTTTCTCTTCTCATCCTTCTCTTCTCTCTATCACACCCTCCTCCTTGCCTCGCAGCTCTAACCACCATCTCCGGCAACCAAACTCTCTCCGGCGACCAAACTCTCGTCTCTGAAGGTGGAACCTTTGAACTGGGTTTCTTTAACAGTTCCTCCAACTTCTACATAGGCATGTGGTACAAAAAGGTCTCTCAGCAAACATTTGTTTGGGTAGCCAACAGAGACAACCCCATCTCTGATAAAAACACTGCCATGTTAAGAATTTATCGTGGTAATCTTGTTTTATTTGATGGCTCTGCAAATCAAGTTTGGTCAACAAACATAACCAACAACTCAGGTAATTCTGTTGTGGCTGTTCTTCTAGATTCTGGGAACCTTATTTTAAGAGACAGGATTGACGCACCAGAATCAGAGACTCCTGTGTGGCAGAGTTTTGATCATCCAACAGATACATTTCTTCCAGGTGGCAAAATCAAGCTCGACAACAAAACGAAAAAGCCTCAGTATCTGACTTCATGGAAGAATACAGAGGACCCTGCAACGGGTTTGTTCTCTGTGGGGATGGATCCTAAAGGGACTAATTCTTATTTGATTCAATGGAACAAGTCTGAAGAGTATTGGACTAGTGGCCCTTGGAATGGAAGAATTTTCAGCTTGATTCCTGAGATGAGGACTAATTATATCTACAATTACTCTTTTGTTTCGAATGAGAATGAGAGTTACTTCACATACTCATTGTATAACACTTCCATTATATCACGATGTGTGATGGATGTTTCCGGGCAGATTAAGATGCTAACATGGTTGGAGAGTACTCAGGATTGGAACTTGTTTTGGTCACAGCCAAGAAGACAGTGTGATGTTTATGCTTTTTGTGGGGCATTTGGGAGCTGCAATGAAAATTCAATGCCATCCTGTAGCTGTTTGACTGGTTTTGAGCCAAAATCAGTGGTTGATTGGAATCTGGAGGATCATTCAGCTGGGTGTCAGAGGAAAGCCAAGTTGCAATGTGATGATTCTAATCCTGTCATGGGGGACACGGTTGGGTTCCTTGCAGTCCCCAACATGGCATTGCCTGAACATGCACAATCCGTGGGATCAGGGAAAAATGTAGCGGAGTGTGAATTAACCTGCTTGAACGACTGCTCCTGCAATGCTTATGCATATGACAGTAATGGGTGTTCAATTTGGATTGGAGATCTTCTGAATATGCAACAGCTCTCTTCAGATGATAGTAGAGGAGAAACATTGTATGTCAAACTCGCGTTATCCGAGTTTGATGATGGTAAAAGCAATAAGGGGGTGATTATTGGTGTTGTTGTGGGCGTGGTTGTGGGGATAGTGGTTTTACTGGTTCTTATTATGTTTGTCATGATTAGGAGAAGGAGGAGAATGACTGGAAATGGAGAACCTGTGGAGGGTTCATTGGTGGCGTTTGGGTATACAGATTTGCAAAATGCTACTAAGAATTTCTCTGAGAAATTGGGAGGGGGAGGGTTTGGTTCTGTTTTCAAAGGAACATTAGCTGATTCCAGTGTTGTAGCAGTGAAGAAGCTAGAAAGTATTAGCCAAGGAGAGAAGAAGTTTCGATCAGAAGTGAGCACAGTTGGGACAGTACATCATGTTAATCTTGTTCGGCTTCGCGGGTTCTGCTCAGAAGGTGCCAAAAAGCTTCTGGTTTATGATTACATGCCAAATGGCTCCTTGGATGTTCACCTGTTCCAGAACCAGAACTCTAAGGTGTTGGATTGGAAAGTGAGGTACCAAATTGCCCTGGGAACTGCAAGGGGATTAACTTACCTCCATGAGAAGTGCAGAGATTGTATCATTCACTGTGATGTGAAGCCTGAAAACATTCTCTTAGATGCTGATTTTTGTCCGAAAGTTGCGGATTTTGGGCTTGCAAAGCTAGTTGGAAGAGAGTTCAGCAGGGTTCTCACAACAATGAGAGGAACTAGAGGCTATCTTGCCCCAGAGTGGACTTCTGGGGTGGCTGTCACGGCAAAAGCTGATGTGTACAGCTATGGAATAATGCTTTTTGAGTTTGTATCAGGTAGGAGGAACTCTGACCCATCTAAAGATGGCCAAGTTAAGGTCTTCCCTGCCTTAGCTGCAAGTGTGGTTATCCAAAGTGGAAGTGTTCTTAGTCTCTTGGACCCTAGGTTGGAGGGAAATGCTGACATTGAAGAGGTTACTAGAGTGATAACAGTTGCATCTTGGTGTGTCCAAGACAGTGAATCTTTCAGACCAAGCATGGGTCAAGTGGTTAAAATTCTTGAGGGGATTTTGGACGTGAACCTGCCCCCACTTCCAAGAACTTGGTAG 2346 0.4369 MNQWWFCRLSLLILLFSLSHPPPCLAALTTISGNQTLSGDQTLVSEGGTFELGFFNSSSNFYIGMWYKKVSQQTFVWVANRDNPISDKNTAMLRIYRGNLVLFDGSANQVWSTNITNNSGNSVVAVLLDSGNLILRDRIDAPESETPVWQSFDHPTDTFLPGGKIKLDNKTKKPQYLTSWKNTEDPATGLFSVGMDPKGTNSYLIQWNKSEEYWTSGPWNGRIFSLIPEMRTNYIYNYSFVSNENESYFTYSLYNTSIISRCVMDVSGQIKMLTWLESTQDWNLFWSQPRRQCDVYAFCGAFGSCNENSMPSCSCLTGFEPKSVVDWNLEDHSAGCQRKAKLQCDDSNPVMGDTVGFLAVPNMALPEHAQSVGSGKNVAECELTCLNDCSCNAYAYDSNGCSIWIGDLLNMQQLSSDDSRGETLYVKLALSEFDDGKSNKGVIIGVVVGVVVGIVVLLVLIMFVMIRRRRRMTGNGEPVEGSLVAFGYTDLQNATKNFSEKLGGGGFGSVFKGTLADSSVVAVKKLESISQGEKKFRSEVSTVGTVHHVNLVRLRGFCSEGAKKLLVYDYMPNGSLDVHLFQNQNSKVLDWKVRYQIALGTARGLTYLHEKCRDCIIHCDVKPENILLDADFCPKVADFGLAKLVGREFSRVLTTMRGTRGYLAPEWTSGVAVTAKADVYSYGIMLFEFVSGRRNSDPSKDGQVKVFPALAASVVIQSGSVLSLLDPRLEGNADIEEVTRVITVASWCVQDSESFRPSMGQVVKILEGILDVNLPPLPRTW* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1367 781 SMART serkin_6 496 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1367 781 Gene3D Phosphorylase Kinase; domain 1 462 570 - -
Lja3g1367 781 ProSiteProfiles PAN/Apple domain profile. 344 429 IPR003609 -
Lja3g1367 781 CDD PAN_AP_plant 341 429 - -
Lja3g1367 781 CDD STKc_IRAK 502 769 - -
Lja3g1367 781 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Lja3g1367 781 SMART ntp_6 352 428 IPR003609 -
Lja3g1367 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Lja3g1367 781 SUPERFAMILY Protein kinase-like (PK-like) 481 767 IPR011009 -
Lja3g1367 781 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 6 780 - -
Lja3g1367 781 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 186 IPR036426 -
Lja3g1367 781 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Lja3g1367 781 SMART blect_4 34 155 IPR001480 -
Lja3g1367 781 Gene3D Transferase(Phosphotransferase) domain 1 571 774 - -
Lja3g1367 781 PIRSF SRK 2 781 IPR024171 GO:0004674
Lja3g1367 781 Pfam D-mannose binding lectin 74 181 IPR001480 -
Lja3g1367 781 Pfam S-locus glycoprotein domain 214 323 IPR000858 GO:0048544
Lja3g1367 781 ProSiteProfiles Protein kinase domain profile. 496 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1367 781 Pfam PAN-like domain 356 411 IPR003609 -
Lja3g1367 781 Gene3D - 25 153 IPR036426 -
Lja3g1367 781 Pfam Protein kinase domain 499 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1367 781 CDD B_lectin 34 155 IPR001480 -
Lja3g1367 781 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 6 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1367 Lja-Chr3 14280157 14282622 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1367 452 776 Receptor kinase-like Gene Family AT5G20050 41.667 1.47e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lja3g1367 Pkinase 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1367 - - gmx:100782119 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1367 3 14280157 14282622 Lja3g1367 3 14280157 14282622 ECH
Lja3g1367 3 14280157 14282622 Lja3g1365 3 14273124 14275993 PCT