Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1363 ATGGAGCTTGACCTTCAAAACCCTCTAGAGAACTTCCATGACCTTCCCTCTGACGCTGTCTCTTCTCTTTTCCACGCTGAATCTGACCACACACCATCACCAAATTACTTCCACTCTCTCAAAGCCAGCGACTTTGACATCTCTGTTAGAAGAAATGTCATCTCATTGATCTCACAGTTGTCCTGCACCTTCGATCCATTTCTGTGCTATCTTGCTATCAACTATCTGGATCGCTTCCTCGCTGACCAAGGAACATTGCAACCAAAGCCATGGGCCAATAAGCTTCTTGCAATCTCTTGCTTCTCTGTAGCAGCCAAGATGTTGAAAACAGAGTACTCTGCCACTGATGTCCAAGTTCTTCTGAATCATGATGATGGCGGCGTCATTTTTGGGGCACAAACAATACAAAGAATGGAAGCTCTTGTTCTAGGTGCTCTACAGTGGCGAATGCGTTCCATCACCCCTTTCTCTTTCCTCCCTTTCTTCAGCAATTTGTTGAACCTCGATGATGACCCTGCATTGAGAAAGGTTCTGAAAGATCGAGCATCTCAAACAATATTAAAGTCACAAAGAGAGATAAAGGTTCTGGAATTCAAGCCATCAATTGTTGCTGCTTCATGTCTTCTCCATGCTTCACATGAGTTGTTTCCCTTTCAATATCCATGCTTCTTAAGAGCTATATCCGATTGTTCATATGTAAATAAGGAAAGTGTGGTGCAGTGCTATAATGTAATACAAGGCATAGCTAGGGAAGAGTACGAATCTGCTGCGTTCAATATTGTAAATTCAAGTTCAGAAACACCGGTCAATGTGTTAGATGAACATTTTCTGAGCTTGGAAAGTGAGAAAACCAATGTTGCTTCTTCTACTACTCTGATACAACAAGAGAAGAAGGACAATATCAAAAGAAGGAAGCTCACCAAATATGGTAACGATGTCCAGTTTTCTCATTTTCGTCAATGCTGA 966 0.4193 MELDLQNPLENFHDLPSDAVSSLFHAESDHTPSPNYFHSLKASDFDISVRRNVISLISQLSCTFDPFLCYLAINYLDRFLADQGTLQPKPWANKLLAISCFSVAAKMLKTEYSATDVQVLLNHDDGGVIFGAQTIQRMEALVLGALQWRMRSITPFSFLPFFSNLLNLDDDPALRKVLKDRASQTILKSQREIKVLEFKPSIVAASCLLHASHELFPFQYPCFLRAISDCSYVNKESVVQCYNVIQGIAREEYESAAFNIVNSSSETPVNVLDEHFLSLESEKTNVASSTTLIQQEKKDNIKRRKLTKYGNDVQFSHFRQC* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1363 321 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 295 - -
Lja3g1363 321 PANTHER CYCLINS 5 295 IPR039361 -
Lja3g1363 321 Pfam Cyclin, C-terminal domain 153 257 IPR004367 -
Lja3g1363 321 Gene3D - 33 151 - -
Lja3g1363 321 SUPERFAMILY Cyclin-like 12 150 IPR036915 -
Lja3g1363 321 SUPERFAMILY Cyclin-like 135 278 IPR036915 -
Lja3g1363 321 CDD CYCLIN 70 143 IPR013763 -
Lja3g1363 321 SMART Cyclin_C_2 153 279 IPR004367 -
Lja3g1363 321 Gene3D - 22 243 - -
Lja3g1363 321 Pfam Cyclin, N-terminal domain 20 150 IPR006671 -
Lja3g1363 321 CDD CYCLIN 153 245 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1363 Lja-Chr3 14256976 14259116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1363 1 297 Core Cell Cycle Gene Families AT4G03270 45.223 2.08e-74 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1363 K18812 - gmx:100799951 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1363 3 14256976 14259116 Lja3g1363 3 14256976 14259116 ECH
Lja3g1363 3 14256976 14259116 Lja3g1363 3 14256976 14259116 PCT