Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1356 ATGGCAGATGAAATCAACCATGCTGCAGTGACAATCTTAGACCGGTGTGAGGTTGCTCCGCCACCAGGTTCACTTCCTTCAACCACTCTCCCCCTCACTTTCTTTGACCTTCCATGGTTCTACTGCCTCCCCGTTGCTCCACCACCAGGCTCAGTTCCCTCAACCACTCTTCCCCTCACTTTCTTTGATATTCCATGGTTTTACTCTCCTCCTGTTCAACGCATCTTCTTTTATGAGTTCCCACACCCTACCCAACATTTCCTCCAAGTAGCAATCCCCACTCTCAAGCACTCACTTACCATAACTCTCCAACACTTCTTCCCCTTCGTTTCCAATCTCATTGTCCCTCCACAACCCTATGTAGACACCCCTTACATCCGCTACCTCCACGGAGACTCTCTCCCCTTCACCGTGGCAGAGTCTAATTCAGACTTTGACCACCTTGTTTCAGATTCTCCACAGGATGTTCGAAACTGGCACCCCCTTGTTCCCACCTTGCCCTCACCTCTCATAGAGGAAGACGGCACGTGTGTGAAACCTCTCATGGCCATTCAGGTAACTGTCCTACCAAACTCTGGATTCAGTATCAGCCTCACGTTCCACCACATTGTTGCGGACGGAAGATCACTTCACCATTTCATCAAGCTTTGGGCCTCTGTTTGCAAAAAAACAGGGGATTCAACTTCCCCTAAAGCCACTTTGTCTCTTCCTTTCCATGACAGAGACAAAGTCAAAGACTCGAAGGGGCTTAAGCTCATCTACTTACAAGAGCTTGAACTCCAACATCCACCACCAGAAATTACGGGTTACATGCAAGATGTTTTCACTGACAAGGTACGCGTCACTCTTGTGTTGAGTCGTGAACGAGTTGATCAACTTAAGAAATGGATCACTCATAAAAGTATCAGCTACGATTCAGGGACACAACACATGTCAACCTTCGTGGTCGCATGTTCCTTAGTTTGGGTCAGTATGATAAAATTAGAGCAGAGAAAAGGTGATTATTGTGTTGCAAAAGGCTCGGATGAACTCTGCTACTTTTTGTTTCTAGCAGATTGTCGTGGTCGTCCTGAATTATCATTCCCTTCAACTTACTTTGGGAATTGTCTTGCTTTTTGCACTGTGGCAATGAAGAAGGATGAGGTGGTGGGAGAAAATGGCCTTATTGAGGTTGCAAATGCTGTTGAGAGGGAGATTAGAAATTGGAAGAGTGATCCTTTACAAAATGCTGAAACATCCATATCGGATTATAGAGAATTATTGAAGCCAGGTAAGTCTTTGCTAACAATTGGAGGGTCGCCAAAACTGGCGGTATACGAGACCGATTTTGGGTGGGGGAAACCTAAGAAATCTGAATCAGTTCATCTTGATACATTTAGAATAGTTTCTATGTCTGATTGTAGAGACAAAGATGGTGGTATGGAGGTTGGTTTGGCGCTTGAAAAGGTTCGAATGAATGATTTCATCAACATCTTGGAACAACAATTCAGTAAAGTGGTGTGTGATTGA 1509 0.4506 MADEINHAAVTILDRCEVAPPPGSLPSTTLPLTFFDLPWFYCLPVAPPPGSVPSTTLPLTFFDIPWFYSPPVQRIFFYEFPHPTQHFLQVAIPTLKHSLTITLQHFFPFVSNLIVPPQPYVDTPYIRYLHGDSLPFTVAESNSDFDHLVSDSPQDVRNWHPLVPTLPSPLIEEDGTCVKPLMAIQVTVLPNSGFSISLTFHHIVADGRSLHHFIKLWASVCKKTGDSTSPKATLSLPFHDRDKVKDSKGLKLIYLQELELQHPPPEITGYMQDVFTDKVRVTLVLSRERVDQLKKWITHKSISYDSGTQHMSTFVVACSLVWVSMIKLEQRKGDYCVAKGSDELCYFLFLADCRGRPELSFPSTYFGNCLAFCTVAMKKDEVVGENGLIEVANAVEREIRNWKSDPLQNAETSISDYRELLKPGKSLLTIGGSPKLAVYETDFGWGKPKKSESVHLDTFRIVSMSDCRDKDGGMEVGLALEKVRMNDFINILEQQFSKVVCD* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1356 502 Pfam Transferase family 51 489 - -
Lja3g1356 502 PANTHER COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED 10 45 - -
Lja3g1356 502 Gene3D - 275 498 IPR023213 -
Lja3g1356 502 SUPERFAMILY CoA-dependent acyltransferases 180 242 - -
Lja3g1356 502 PANTHER - 45 499 - -
Lja3g1356 502 PANTHER COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED 45 499 - -
Lja3g1356 502 PANTHER - 10 45 - -
Lja3g1356 502 Gene3D - 42 263 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1356 Lja-Chr3 14188056 14195935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1356 64 492 Monolignol Biosynthesis Gene Families AT5G48930 23.767 3.46e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1356 - - gmx:100797294 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1356 3 14188056 14195935 Lja3g1356 3 14188056 14195935 ECH