Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1329 ATGGGGTGTTGTGTCTCAACAAGCAGTCGAAGTGCTTGCAGTAGCAGGAGCGATGGAGAAGCGGCCTCTCCGTCCTGTCTAGAAATCGGATTCTGCGGTCAAAAGAGTGCAAGGAGAACATCCTCAGATCTTGTTGGATCTCTGAACAAGTTATCATCCTTACCAAACAGAATTTTCGCTAATGGAAAGAGCAGGTCTTCTTGCATATTTACGCAGCAGGGTCGTAAGGGTGTTAATCAAGATGCCATGATTGTATGGGAAGACTTCATGTCAGAAGATGTGACCTTTTGTGGTGTCTTTGATGGCCATGGTCCACAAGGTCACCTTGTCGCGCGCAAAGTCCGGGATGCATTGCCAGTAAAACTGCTTTCATATTTAAATTCCTATGAGTCAAGGGGGAATGCTTCAGGTAAAGCTTCTATTAAGGGGGAAATAAAGCCTGAAACTGAAGAATCTGAGAAGGATTTCTGTGGTGAGGATACACTGAGTGCTATGTGGAGAGAAGCTTTCATGAAGGCATATAAGGCTATGGACAAAGAGCTGAAGTCTCATCCAAATTTGGATTGCTTTTGTAGTGGGAGCACATCTGTAACTATAGTGAAGCAGGGTTCAAGTTTGTTCATGGGGAGTATTGGAGATTCGCGAGCAGTCATGGGAACCAAGGACAGCAATGACTTGATGGTGGCAATTCAGCTTACTGTTGATTTGAAGCCTGATTTGCCAAGAGAAGCAGAAAGAATTAAACGGTGCAAGGGCAGGGTATTTGCAATGCAAGATGAGCCAGAAGTTCCAAGGGTGTGGTTACCTTTTGATGATGCACCTGGATTAGCCATGGCTAGAGCATTTGGAGATTTTTGCTTGAAGGAGTATGGTGTGATATCTATACCTGAGTTTTCTCATCGGCTGCTCACGGACAGAGATCAGTTCATTGTTCTTGCCTCTGATGGGGTGTGGGATGTTTTGAGCAATGAAGAGGTGGTTAAGATAGTATCTTCAGCACCAACTCGATCAGCAGCAGCAAGAGTTCTGGTTGATTCTGCTGCTAGAGAGTGGAGACTTAAATATCCTACTTCAAAAATGGATGATTGTGCTGTTGTGTGTCTATTTTTGGATGGCAAAATGGACTCAGAATTCGAGTGCGATGAGCAGTGCTTTTCTTCTGCAACCATCCAGGGCAATCCTTCGGGTAACCCAGCTGAGTCAGATGAAGGTCAAAAGTCTGAGCCATCTCTGCAAAGGAACAACACTGTGAGATCCTCAGAAGATGAGACCAGCGGAGGACGAGGAGTAGGTGTTGTTGCTGAAGACGGAACATCATCAGCTGAAGATCAAAACTGGTCAGGTCTAGAGGGTGTTACCCGAGTAAACTCACTGGTTCAACTTCCTAGGTTTTCTGAGGAAAGGCCTAACTCTTGA 1416 0.4534 MGCCVSTSSRSACSSRSDGEAASPSCLEIGFCGQKSARRTSSDLVGSLNKLSSLPNRIFANGKSRSSCIFTQQGRKGVNQDAMIVWEDFMSEDVTFCGVFDGHGPQGHLVARKVRDALPVKLLSYLNSYESRGNASGKASIKGEIKPETEESEKDFCGEDTLSAMWREAFMKAYKAMDKELKSHPNLDCFCSGSTSVTIVKQGSSLFMGSIGDSRAVMGTKDSNDLMVAIQLTVDLKPDLPREAERIKRCKGRVFAMQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVKIVSSAPTRSAAARVLVDSAAREWRLKYPTSKMDDCAVVCLFLDGKMDSEFECDEQCFSSATIQGNPSGNPAESDEGQKSEPSLQRNNTVRSSEDETSGGRGVGVVAEDGTSSAEDQNWSGLEGVTRVNSLVQLPRFSEERPNS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1329 471 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
Lja3g1329 471 SMART PP2C_4 55 368 IPR001932 -
Lja3g1329 471 MobiDBLite consensus disorder prediction 391 452 - -
Lja3g1329 471 MobiDBLite consensus disorder prediction 391 423 - -
Lja3g1329 471 PANTHER ALPHABET, ISOFORM E-RELATED 1 459 - -
Lja3g1329 471 MobiDBLite consensus disorder prediction 1 23 - -
Lja3g1329 471 MobiDBLite consensus disorder prediction 438 452 - -
Lja3g1329 471 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 459 - -
Lja3g1329 471 CDD PP2Cc 65 370 IPR001932 -
Lja3g1329 471 SUPERFAMILY PP2C-like 60 372 IPR036457 -
Lja3g1329 471 MobiDBLite consensus disorder prediction 1 21 - -
Lja3g1329 471 Pfam Protein phosphatase 2C 140 348 IPR001932 -
Lja3g1329 471 Gene3D - 59 376 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1329 Lja-Chr3 13932762 13934895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1329 1 471 PP2C-type Phosphatase Gene Family AT1G03590 67.573 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1329 - - gmx:100777448 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1329 3 13932762 13934895 Lja3g1329 3 13932762 13934895 ECH
Lja3g1329 3 13932762 13934895 Lja3g1329 3 13932762 13934895 PCT