Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1325 ATGAAGAAGATCTTTTCATCAGAGACCATGGACATCCCCGACGGCGTGAGCATCAAGGTTGAAGGCCCTCGCGGGGATTTCCAGCTCATCACCGATGAGAACGGCAAGAAGAAGCTCAAGATCGAGGCATGGTTCGGTACCCACAAGATGAGGCTCGTCTATGCCCATTTTCCCATCAATGCTAGCATCACTAATCACAACAAGGGCATCAAGATCCATAGCTTTCTACTTTTCGTGAGGAAAGTGGATATGCTTGATGGAGTTTCCATTGTGCGATCTGAGAAGGTGAAGGATGAGTTGGTTTTCGATGGAAATGACATTGAGCTTGTTTCTAGGTCATGTGCCCTTATCAATCAGAACAAGGATATCAGGAAGTTTCTTGATGGTATTTATGTTAGTGAGAAGGGGACCGAGTAA 417 0.458 MKKIFSSETMDIPDGVSIKVEGPRGDFQLITDENGKKKLKIEAWFGTHKMRLVYAHFPINASITNHNKGIKIHSFLLFVRKVDMLDGVSIVRSEKVKDELVFDGNDIELVSRSCALINQNKDIRKFLDGIYVSEKGTE* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1325 138 SUPERFAMILY Ribosomal protein L6 48 135 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja3g1325 138 PANTHER RIBOSOMAL PROTEIN L6-RELATED 48 135 - -
Lja3g1325 138 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 48 135 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja3g1325 138 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 49 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja3g1325 138 Gene3D - 45 138 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja3g1325 138 PANTHER RIBOSOMAL PROTEIN L6-RELATED 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1325 Lja-Chr3 13892606 13893442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1325 1 135 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 58.824 1.21e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1325 K02940 - ini:109175062 197.593