Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1320 ATGGCTGAAGCTGATCACAACACTCGCAAGGTTACAAAGATGGGTGAAAGCCAAGATTGGGAGATTCAAAAGGGAAAATTTGAAGATTCCATTGCCCATAACAGGCCTCTCAAGAAGATTCAACGTCGAAATCCAAACCAACAACAACAGCAGCAGCAGCAACCTTCTCCCTCCTCTGTTCCTTCCTCCACAGCTTCCAGAATCGTATTTCCTTTCGCCTTTGACACTTCCCAACAACCTCCAATGCAATTCCCAAACCAGTTAACTCCTAACTTACCTTATCTCCATCCACCAATGCAATTGCAAACCACACAGCAGCAGCAACAACAGATGATATCTTTCGGTTCCCAACAGCAACAGAACATAGCATATCCACCACTCATAGCCAGAGATTCAACACTGCCACAGCAAAATCAGCAGCAGCAGCAATATCAGCAACATCTTCTTCAGTATTGGAGTGACGCCCTGAATCTAAGTCCAAGAGGAAGGATGATGATGATGCTGAACAACAACAACACCAGGTTTGGACCACATGGTAGTACTATTAGGCCACCACAACCGATTCAACCAATAAACACAACCAAGCTCTATAGGGGAGTGAGGCAACGCCATTGGGGAAAATGGGTAGCTGAAATTCGTCTTCCTCGCAACCGGACTCGTCTCTGGCTAGGCACGTTCGACACGGCGGAAGACGCTGCCATGGCCTATGACCGTGAGGCCTTCAAGTTGAGAGGGGAGAATGCCAGGCTCAATTTCCCTGAACTGTTTCTCAACAAGGATAAAGACAAAGACAAAGATAAAGATGATAAGGAACCTTCTTGTTCCACACCAGCTCATACAACAACCTCATCTGCTTCTTCTCCTCCTTCCGGCCACAGCGCCGCCGCCAAGAAGAAGAAGCAGATTGAACCTGCAATTGAAAGCTCTGATGTGCAGCAGCTGCCGCCAACAGAAGAAGAGTCTAATGAGAATGACTCTGGAGTTGGGTCCAGTGGTGATGCCACGGTGATGAGTGATGAGGGTCAAGCAGTTTCACAGGAATTTGTTTGGGGAGAAATGTCAGCATGGTTCAATGCAATTCCAGCTGCTTGGGGTCCAGGTAGTCCTGTTTGGGATGATAATGATCTTTTTTTACATTCTCACCTTCCTTTTGCTACCAATCCCAATCAACAAGAATTCAATGATGCTGTTGATCATCAAAGACAAGATCATAACATGGGAATGGCATCAGGTTCTTCCATGAGGCCCTTCTTCTGGAAGGATCAGGATTAA 1272 0.4654 MAEADHNTRKVTKMGESQDWEIQKGKFEDSIAHNRPLKKIQRRNPNQQQQQQQQPSPSSVPSSTASRIVFPFAFDTSQQPPMQFPNQLTPNLPYLHPPMQLQTTQQQQQQMISFGSQQQQNIAYPPLIARDSTLPQQNQQQQQYQQHLLQYWSDALNLSPRGRMMMMLNNNNTRFGPHGSTIRPPQPIQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKDKDKDKDKDDKEPSCSTPAHTTTSSASSPPSGHSAAAKKKKQIEPAIESSDVQQLPPTEEESNENDSGVGSSGDATVMSDEGQAVSQEFVWGEMSAWFNAIPAAWGPGSPVWDDNDLFLHSHLPFATNPNQQEFNDAVDHQRQDHNMGMASGSSMRPFFWKDQD* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1320 423 PRINTS Ethylene responsive element binding protein signature 219 235 IPR001471 GO:0003700|GO:0006355
Lja3g1320 423 PRINTS Ethylene responsive element binding protein signature 197 208 IPR001471 GO:0003700|GO:0006355
Lja3g1320 423 ProSiteProfiles AP2/ERF domain profile. 196 253 IPR001471 GO:0003700|GO:0006355
Lja3g1320 423 MobiDBLite consensus disorder prediction 259 274 - -
Lja3g1320 423 SUPERFAMILY DNA-binding domain 196 254 IPR016177 GO:0003677
Lja3g1320 423 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 24 420 - -
Lja3g1320 423 MobiDBLite consensus disorder prediction 306 336 - -
Lja3g1320 423 Gene3D AP2/ERF domain 196 254 IPR036955 GO:0003700|GO:0006355
Lja3g1320 423 MobiDBLite consensus disorder prediction 41 64 - -
Lja3g1320 423 SMART rav1_2 196 259 IPR001471 GO:0003700|GO:0006355
Lja3g1320 423 MobiDBLite consensus disorder prediction 1 36 - -
Lja3g1320 423 CDD AP2 195 255 IPR001471 GO:0003700|GO:0006355
Lja3g1320 423 MobiDBLite consensus disorder prediction 275 291 - -
Lja3g1320 423 MobiDBLite consensus disorder prediction 1 64 - -
Lja3g1320 423 MobiDBLite consensus disorder prediction 259 336 - -
Lja3g1320 423 Pfam AP2 domain 197 245 IPR001471 GO:0003700|GO:0006355
Lja3g1320 423 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 24 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1320 Lja-Chr3 13833053 13835235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1320 82 381 AP2-EREBP Transcription Factor Family AT2G20880 48.684 2.49e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja3g1320 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1320 - - gmx:100101898 372.089