Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1315 ATGGACCCGCCGCAGAGCTACGCTGGAGGGAAAGTGCTTTATCATGGAACAAAGCCAGGGAGGAAGGAGAAGGCATGCAATGTTGCTGCTTTCATGGACCAAGAATGGAAGTCTGCCACTGCAACATACATCAAAGATACAGAGGGATCTCTCATTACAGAAGGAGCTTGTGGATATGGAGACCTTCACAAGGTTAACTATGGGGAATATAGTACTGGGTTAAGCACCTTCTTGTTCAACAGAGGGAGTACTTGTGGGGCTTGTTATGAGATCAGATGCGTTGATCACATCTTATGGTGCTTGCAGGGAAGCCCCTCTGTAGTTGTTACTGCTACAGATTTCTGTGCTCCAAATTATGGACTTGCAGCTGATTATGGTGGCTGGTGCAATTTTCCAAGACAGCATTTTGAGATGTCAGAAGCTGCATTTGGTGAAATTGCCAAGAGAAAATCTGATATAGTGCCAGTTCAGTATACAAGAGTAAAATGTCAAAGAAGCGGTGGCCTGAAATTCACAATGAGTGGAAGCTATCACTTCTATCAAGTTCTGATTACCAATGTAGGGTTGGATGGTGAAGTGGTTGCTGTGAAAGTGAAGGGAACTATAACAGGATGGATACCCATGGCAAGGAATTGGGGACAAAACTGGCATTGCAATGTGAACCTTCAACGACAGCCTCTGTCATTTGAGGTGACCATCAGCAGTGGAAAAACACTCACATCTTACAATGTCGCCCCTGCTAACTGGAAATTTGGACAGACATTCGAAGGTAAACAGTTCTAG 783 0.447 MDPPQSYAGGKVLYHGTKPGRKEKACNVAAFMDQEWKSATATYIKDTEGSLITEGACGYGDLHKVNYGEYSTGLSTFLFNRGSTCGACYEIRCVDHILWCLQGSPSVVVTATDFCAPNYGLAADYGGWCNFPRQHFEMSEAAFGEIAKRKSDIVPVQYTRVKCQRSGGLKFTMSGSYHFYQVLITNVGLDGEVVAVKVKGTITGWIPMARNWGQNWHCNVNLQRQPLSFEVTISSGKTLTSYNVAPANWKFGQTFEGKQF* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1315 260 Gene3D - 20 164 IPR036908 -
Lja3g1315 260 PANTHER EXPANSIN-A20 31 260 - -
Lja3g1315 260 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Lja3g1315 260 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Lja3g1315 260 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Lja3g1315 260 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Lja3g1315 260 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Lja3g1315 260 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Lja3g1315 260 Gene3D - 168 260 IPR036749 -
Lja3g1315 260 SUPERFAMILY Barwin-like endoglucanases 27 186 IPR036908 -
Lja3g1315 260 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Lja3g1315 260 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Lja3g1315 260 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Lja3g1315 260 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Lja3g1315 260 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Lja3g1315 260 PRINTS Expansin signature 93 104 IPR002963 GO:0009664
Lja3g1315 260 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Lja3g1315 260 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Lja3g1315 260 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Lja3g1315 260 SMART dpbb_1 71 158 IPR007112 -
Lja3g1315 260 PANTHER EXPANSIN-A15 31 260 IPR002963 GO:0009664
Lja3g1315 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 168 IPR007112 -
Lja3g1315 260 Pfam Lytic transglycolase 73 158 IPR009009 -
Lja3g1315 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Lja3g1315 260 SUPERFAMILY PHL pollen allergen 165 257 IPR036749 -
Lja3g1315 260 Pfam Expansin C-terminal domain 170 246 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1315 Lja-Chr3 13770216 13771987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1315 30 260 Expansin Gene Family AT4G38210 64.807 6.96e-116 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1315 - - gmx:100809013 431.024