Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1314 ATGCAGGGCCACCGTGTCTCCGCCGTGTTTCTACTTAGCTTGTGCGTTAGAGTTGTGCTGGTCTGCGCGGAGGGACAGACTCAGGTGCACCATGTCCTCGACCCGCATTGGTATCCCGGCACCGCCACCTGGTACGGCGAGCCTGAGGGAGACGGCAGCACCGGAGGGGCATGTGGGTATGGTAATTTGGTGGACGTGAGGCCGTTGAAGGCAAGGGTGGGTGCGGTGGGGCCAGTGTTGTTCATGAAGGGGGCAGGGTGCGGGGCGTGCTACAAGGTGAAGTGCCTGGACCATAGCATTTGCGCTAAGCGGGCAGTGACGGTTATAATAACCGATGAGTGCCCTGGCTGCCCCTCTGATCGGACGCATTTTGACCTCAGTGGTGCCGCCTTTGGCCGCATGGCTGTTGCCGGCGAGAATGGCCAGCTCAGGAACCGAGGTGAAATCCCTGTCATTTACCGAAGAACGCCATGCACATATACCGGTAAAAACATTGCTTTTCAAGTGAATGAAGGTTCTACACCTTTTTGGCTATCAATTCTGGTGGAATTTGAGAATGGAGATGGGGACATCAGCTCCATGCATATAAAAGAAGCAGGGTCTAGTGAGTGGCTACAGATGAATCACCTATGGGGTGCAAATTGGTGCCTAAATGGGGGACCTCTAAGAGGACCTTTCTCTGTAAGACTAAGCACATCAACTGGGAGAAGCCTCACTGCTACAAATGTTATTCCAAGTAACTGGTCTCCGAAAGCTACTTATACCTCTCGTCTTAATTTCTCTCCTTAG 789 0.5323 MQGHRVSAVFLLSLCVRVVLVCAEGQTQVHHVLDPHWYPGTATWYGEPEGDGSTGGACGYGNLVDVRPLKARVGAVGPVLFMKGAGCGACYKVKCLDHSICAKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAVAGENGQLRNRGEIPVIYRRTPCTYTGKNIAFQVNEGSTPFWLSILVEFENGDGDISSMHIKEAGSSEWLQMNHLWGANWCLNGGPLRGPFSVRLSTSTGRSLTATNVIPSNWSPKATYTSRLNFSP* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1314 262 SMART dpbb_1 73 153 IPR007112 -
Lja3g1314 262 Pfam Lytic transglycolase 78 152 IPR009009 -
Lja3g1314 262 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Lja3g1314 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Lja3g1314 262 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Lja3g1314 262 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Lja3g1314 262 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Lja3g1314 262 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Lja3g1314 262 SUPERFAMILY Barwin-like endoglucanases 32 162 IPR036908 -
Lja3g1314 262 SUPERFAMILY PHL pollen allergen 163 256 IPR036749 -
Lja3g1314 262 Gene3D - 22 159 IPR036908 -
Lja3g1314 262 PRINTS Major pollen allergen Lol pI signature 212 229 IPR005795 GO:0005576|GO:0019953
Lja3g1314 262 PRINTS Major pollen allergen Lol pI signature 232 249 IPR005795 GO:0005576|GO:0019953
Lja3g1314 262 PRINTS Major pollen allergen Lol pI signature 135 150 IPR005795 GO:0005576|GO:0019953
Lja3g1314 262 PRINTS Major pollen allergen Lol pI signature 113 128 IPR005795 GO:0005576|GO:0019953
Lja3g1314 262 PRINTS Major pollen allergen Lol pI signature 183 198 IPR005795 GO:0005576|GO:0019953
Lja3g1314 262 PRINTS Major pollen allergen Lol pI signature 167 182 IPR005795 GO:0005576|GO:0019953
Lja3g1314 262 PANTHER EXPANSIN-B3 9 262 - -
Lja3g1314 262 Gene3D - 160 261 IPR036749 -
Lja3g1314 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 163 IPR007112 -
Lja3g1314 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Lja3g1314 262 PANTHER EXPANSIN-LIKE PROTEIN B1 9 262 - -
Lja3g1314 262 Pfam Expansin C-terminal domain 165 245 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1314 Lja-Chr3 13763560 13765650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1314 9 218 Expansin Gene Family AT4G28250 62.264 1.63e-91 267