Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1311 ATGGCCTCAATGCAGTATTTTGAGGAGCCTGTGCCCCAAGTGGATTCATTTGAAGACAAATCATCTCTGGAAATGTGGAAATGTGGCGGTGATGATGCTATTGAAGATTCTGATAAAAATGGCTCTGGTGGCTTTGATTGCAACATCTGCTTAGACTGTGTGCAAGATCCAGTGGTTACTCTGTGTGGTCATCTCTATTGTTGGCCCTGCATTTACAAATGGCTTAATTTCTACAGCATCTCATCAGACTATGAAGAAAAGGAGGAGCCTATATGTCCGGTATGCAAATCAGAAATCTCACAATCATCCCTCGTTCCACTATACGGCCGCGAAGGCCAAACCACCTCACCTTCTAAAAGCAAGGCTCAGCAAGTAGGGATTGCCATACCTCCAAGACCCCTTGTTCCTTCATGGGTGGCTGAGTTATCAAGATCTTCCCAACCTACTTCTCAAGCTCATCATCATCCCCATTATCCTCACCATCCTCAACAGTTCAACTCAATTTCAGGAAGTTACACATCACCAATGCTTAACACAGGTGGTTCACAAACAGCTTATGGAGTCATTGGCGAGATGATATATGCAAGGGTCTTTGGAAACCAAGTAACAAACATATATACATACCCTAATTCATATGATCATTCCAGGATCAGTAGTAATCCAAGGATCAGAAGGCATTTGATGCAAGCTGATAAGTCACTTAGTAGAATCTGTTTTTTCCTCCTTTGTTGTGCAGTTTTGTGTCTTCTCTTATTCTGA 759 0.4256 MASMQYFEEPVPQVDSFEDKSSLEMWKCGGDDAIEDSDKNGSGGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLNFYSISSDYEEKEEPICPVCKSEISQSSLVPLYGREGQTTSPSKSKAQQVGIAIPPRPLVPSWVAELSRSSQPTSQAHHHPHYPHHPQQFNSISGSYTSPMLNTGGSQTAYGVIGEMIYARVFGNQVTNIYTYPNSYDHSRISSNPRIRRHLMQADKSLSRICFFLLCCAVLCLLLF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1311 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 252 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lja3g1311 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 127 IPR013083 -
Lja3g1311 252 CDD RING-HC_AtRMA_like 45 97 - -
Lja3g1311 252 SUPERFAMILY RING/U-box 44 108 - -
Lja3g1311 252 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
Lja3g1311 252 ProSiteProfiles Zinc finger RING-type profile. 47 96 IPR001841 -
Lja3g1311 252 SMART ring_2 47 95 IPR001841 -
Lja3g1311 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 252 - -
Lja3g1311 252 Pfam Zinc finger, C3HC4 type (RING finger) 47 95 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1311 Lja-Chr3 13725813 13728586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1311 23 252 C3H Transcription Factor Family AT4G28270 40.000 5.83e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1311 K10666 - gmx:100785491 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1311 3 13725813 13728586 Lja3g1311 3 13725813 13728586 PCT