Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1305 ATGGAACCTCTGCTCAGAGGCGAAAGCAGTGGCCGGAGACTCGGGCCGCGGCAGCGAGGAGGAGTGTTCGGTCGCGCCGATGCTATCGCCTACGGCTCCAACTACGAGAAAGCCGCCGCGCTCATCGATCTGGCTGAAGATGGGGTTGGTATACCTGAGAAAATTCTTGATTCATCAAGCTTTCAAAGTTCTGCAAGATTTTATTTTAAATTCACAAAATGCGATCTCATCTGGTCTCTTAGTTACTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAACCTCTATGGTGCCAGAATAGTGCACATTCTTGCAAAGATAGAGAGTATTTCTTCTTGGGACAGTTGCCATATCTAACTCCTGCAGAATGTCTTATTTATGAGGGAATTACTCTTGTTTTGCTAATCATTCATACTTTCTTCCCATTATCATATGAAGGGTCCCGTTTATACTGGACAAATGCTATTAACCTATTGAAGGCCTTCTGTCTATTAGCTCTCGTAGCCGACATGTTGGTTTATGCTCTTTATATGTCTCCACTGGCTTTTGGTTTTTTACCTTTCAGAATTGCACCTTATATCAGGGTTGTTCTTTTTGTTCTGAATATTAGGGAGCTACGAGATACCATCATTGTCTTGGTTGGAATGCTTGATACATACTTCAATATCTTGGCTTTGTGGTTCCTGTTTCTCGTTTTCTCAAGTTGGGTGGCATATGTGATTTTTGAAGATACAATACAAGGGAATACAGTATTCACTTCCTATGTTACTACGTTATATCAGATGTTTCTTTTATTTGCCACAGCCAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCGCGTTGGTCTATCCTGTTTTTCATTCTCTTTGTGCTGGTGGGAGTTTACTTTGTTACAAACTTGATCCTTGCCGTTGTTTATGACAGTTTCAGGGGTGAGCTTGTAAAACAAGTTTCTGAGATGGACCGAAGGAGAAGAGCAATGCTGGGAAAAGCTTTTGATCTCTTAGACACACATAATGCTGGACTTCTTAACAAAGATCAATGCATTAGGCTCTTTGAGGAGCTTAACAAGTACAGGACTTTGCCAAATATCTCTAGGGAAGAGTTTGAGTTGATATTTGATGAGCTGGATGATAGTCATGATGTAAAGATCAACAAGGACGAATTTGCTGATATTTGCAATGCTATTTCTTTAAAATTCCAGAAGGAGAATGTTCTTTCTTATTTTGAGTATTTAACATTCTACCATTCACCCACCTCAAAGAGTTTGAAAGCCTTTGTGAAGAGCCCCACATTTGGATACCTAGTGTCCTTCATTCTCATACTGAATCTGGTTGCTGTAATTATTGAGACAACGCTTGATATACAAGAAAGTTCTGCTCAAAAGGTGTGGCAAGTTGTTGAATTCGTTTTTGGGTGGATATACGTAATAGAAATGGCTCTAAAGGTTTATTCATTTGGATTTGAGAACTATTGGCGAGATGGTCAAAATCGCTTTGACTTTATTATCACGTTGATAATTGTCATTGGAGAAACTATAACTTTTGTTTTACCTGATGATGGTGTGCCTTTTATCACAAATGGAGAATGGATTCGTTACCTTCTTCTTGCTAGAATGTTGAGATTGATAAGGCTCCTAATGCATGTCAAGCGATACAGAGGCTTTGTGGCAACTTTCTTAACTCTTATACCAAGTTTGATGCCATACTTAGGGATCATATTTTGTGTGTTGTGTATTTATTGCTCACTTGGTGTACAGATTTTTGGGGGAATCGTTAATGCTGGAAACCCTGATCTGGAAACCACAGACCTTGCTGCTAATGACTATTTGCTTTTTAATTTTAATGACTATCCAAATGGGATGGTGACCCTGTTCAATTTGTTGGTCTCAGAGGTTTGGTTAGAATTGATGGAGAGCTACACGGAATTAACTGGGACTTCTTGGACCTATCTGTACTTCATTAGCTTCTACTTGATTACTGTGTTGCTGCTTTTGAATTTGATTATTGCTTTTGTCTTGGAGGCGTTCTTCGCTGAAATTGAACTTGAGTCATCAGAAACTTGTGATGGAAATGAGAAGGAGCTTGAGGGAGATCAATATCGAAGGCGACGATCTGTTGGCACAAAAACACGAAGCCAAAGGGTTGATGCTCTTCTGCATCATATGTTGAGTTCTGAGTTGTGTCAAGATCAGCCTTCCAATGCATAA 2214 0.3979 MEPLLRGESSGRRLGPRQRGGVFGRADAIAYGSNYEKAAALIDLAEDGVGIPEKILDSSSFQSSARFYFKFTKCDLIWSLSYFALIVLNFLEKPLWCQNSAHSCKDREYFFLGQLPYLTPAECLIYEGITLVLLIIHTFFPLSYEGSRLYWTNAINLLKAFCLLALVADMLVYALYMSPLAFGFLPFRIAPYIRVVLFVLNIRELRDTIIVLVGMLDTYFNILALWFLFLVFSSWVAYVIFEDTIQGNTVFTSYVTTLYQMFLLFATANNPDVWVPAYKSSRWSILFFILFVLVGVYFVTNLILAVVYDSFRGELVKQVSEMDRRRRAMLGKAFDLLDTHNAGLLNKDQCIRLFEELNKYRTLPNISREEFELIFDELDDSHDVKINKDEFADICNAISLKFQKENVLSYFEYLTFYHSPTSKSLKAFVKSPTFGYLVSFILILNLVAVIIETTLDIQESSAQKVWQVVEFVFGWIYVIEMALKVYSFGFENYWRDGQNRFDFIITLIIVIGETITFVLPDDGVPFITNGEWIRYLLLARMLRLIRLLMHVKRYRGFVATFLTLIPSLMPYLGIIFCVLCIYCSLGVQIFGGIVNAGNPDLETTDLAANDYLLFNFNDYPNGMVTLFNLLVSEVWLELMESYTELTGTSWTYLYFISFYLITVLLLLNLIIAFVLEAFFAEIELESSETCDGNEKELEGDQYRRRRSVGTKTRSQRVDALLHHMLSSELCQDQPSNA* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1305 737 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Lja3g1305 737 SUPERFAMILY Voltage-gated potassium channels 431 678 - -
Lja3g1305 737 Gene3D - 311 395 - -
Lja3g1305 737 MobiDBLite consensus disorder prediction 690 714 - -
Lja3g1305 737 SUPERFAMILY EF-hand 320 412 IPR011992 -
Lja3g1305 737 MobiDBLite consensus disorder prediction 690 707 - -
Lja3g1305 737 Gene3D - 424 557 IPR027359 -
Lja3g1305 737 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 2 733 IPR044581 GO:0005245
Lja3g1305 737 Pfam Ion transport protein 432 678 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja3g1305 737 Pfam Ion transport protein 131 311 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja3g1305 737 Gene3D - 204 310 - -
Lja3g1305 737 Gene3D - 558 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1305 Lja-Chr3 13660208 13682615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1305 2 737 Ion Channels AT4G03560 66.125 0.0 1022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1305 K16900 - gmx:100806160 1196.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1305 3 13660208 13682615 Lja3g1305 3 13660208 13682615 ECH