Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1301 ATGGGTTGCATAGTTTCCAAGAGTTCAGCTGTGAAAGACAGCCGGGAAGGGTTGGCAAAGGAGTTAAACTTGACATCTTCTAGCAGAAGGACATATGATATGAAGGTGTCGCGGTCGAGTACCAAGAAAAGGGTTGAGGGAGATTTGGGAAAAGATAAGAAATTTGGTGGTGTTGATATGAAAGTTTCATTGATTGAAAAGAATGTCGATGGTTCAGTGCGGTCGTATGATGATCGGAGTGAGAAGAGGAAGATGGAGAAACCTGAATTGACTGTGATTGGTTATCCGGGTCTTGGAAGGATTCCAAAGGCTTCAGAAGGGGAGCAAGTTGCTGCAGGATGGCCAACTTGGCTCTCTTCTGTTGCTGGTGAAGCTATCCAGGGGTGGATACCACGGTGTGCTAATACTTTTGAGAAGTTCAATAAAATTGGCCAAGGAACTTATAGCACTGTATATAAGGCACGTGATGTGACTCACCAAAAGATTGTTGCCTTGAAGAAAGTAATCTTTGATAATCTTGATTCTGAGAGTGTCAAATTTATGGCAAGGGAGATTCTTATTCTGCGTAGGCTTGACCATCCCAATGTAATAAAGTTGGAGGGCTTGATAACATCGCGGACATCTCGTAGCTTGTACCTTGTTTTTGAATATATGGAACATGATCTTACAGGACTTGCATCAGATCCTGGCATTAAGTTTTCTGAACCACAGATTAAATGCTACATGCAGCAGCTTCTTAGTGGATTGGATCATTGTCATAGTCGTGGTGTCCTCCATCGGGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGCATCTTAAAGATTGCAGATTTTGGCTTGGCAAATTTTTTTGATCCTGATCATAGTGTTCCATTGACCAGCCGTGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTCGGAGCTTCTAATTATGGAGTTGCAGTGGACTTGTGGAGCACTGGTTGCATACTTGGGGAACTATACTGTGGCAGGCCCATATTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAGGATTTTTAAGCTTTGTGGCTCACCATCTGATGACTATTGGCGTAAACTTCGGTCGTCCCATTCAACAGTATTCAGGCCTCCACTCCTTTATAGGCGTTGTGTTGCAGAAACTTTTAAAAAATATCCATCTTCTGCCCTGAGGCTGATAGAGATCCTACTTTCTGTTGATCCTACTCTTCGAGGGACAGCAGCTACAGCTCTGAAGAATGAGTTCTTTTCATCGGAACCCCTCGCTTGTGATCCATCAACTTTACCAAAATATCCTCCCAGCAAAGAGATCGACACTAAATTGCGGGAAGAAGCAACCAGAAGGCAAGGAGCTCTTGGGGGAAAGGAGCAAAAAGTTGGACCAGGAGTTAGACAAGAGAAAGAACCTCGGAAGTTTGTCTTGTCCAGTGACAATGTTGATTCCCACATATTAATGCAGCAAAGGCAATGGCTTATGAACTCAAAGAGCCAGAATGAATTCTTCAACCCTCAGAGAGAACCCATGTCTGGATTCCTGGTTTATCCAAACAAGCAGTCAGAAGATGTTAAAGAAATGGCAAATTATTTCTCTGGGCCTCTTAGTCAGAGGCCTTCACACTCAGGTTCATTGGTTCCAGGTTCAGGTTGGGACAATGTTAGAAAAGAAGCTGGTGAGCAGCGGCCTCGTGTTTCAAACAAACTCAACTTATCAAAAAGTTCAACAGTATCTGGATTAGTGCCACGTAGGACTTCGATGTATGGAGATCAAAAAGAAAACCCAGTTCCCTTACGGCCCCGGCAAATAATTCAAGCACAAAAACCTTTGGAGTCAACTAATGGATCAGAATCAAGAAGAAGGTTTGATAAAAAAAGCCAATCTCAGATAATTGATCTCAGCCAAAGAGAAAATGGAAAGGTCTCCATTGAAACATTGATTCAGAACGAGCATGGATCCAGGGGAAACAAAATCTATATGTCTGGTCCATTACTTTCATCAAACAGTACGGATCAGATGCTCAGAGAGCGCGATCGAAAGATCCAAGAATATTCTAGACGAGCGCGAATTGACAAGTGTAAAGGTGAGAAAGTTGGTCCACATAAATATTAG 2121 0.4267 MGCIVSKSSAVKDSREGLAKELNLTSSSRRTYDMKVSRSSTKKRVEGDLGKDKKFGGVDMKVSLIEKNVDGSVRSYDDRSEKRKMEKPELTVIGYPGLGRIPKASEGEQVAAGWPTWLSSVAGEAIQGWIPRCANTFEKFNKIGQGTYSTVYKARDVTHQKIVALKKVIFDNLDSESVKFMAREILILRRLDHPNVIKLEGLITSRTSRSLYLVFEYMEHDLTGLASDPGIKFSEPQIKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLANFFDPDHSVPLTSRVVTLWYRPPELLLGASNYGVAVDLWSTGCILGELYCGRPILPGKTEVEQLHRIFKLCGSPSDDYWRKLRSSHSTVFRPPLLYRRCVAETFKKYPSSALRLIEILLSVDPTLRGTAATALKNEFFSSEPLACDPSTLPKYPPSKEIDTKLREEATRRQGALGGKEQKVGPGVRQEKEPRKFVLSSDNVDSHILMQQRQWLMNSKSQNEFFNPQREPMSGFLVYPNKQSEDVKEMANYFSGPLSQRPSHSGSLVPGSGWDNVRKEAGEQRPRVSNKLNLSKSSTVSGLVPRRTSMYGDQKENPVPLRPRQIIQAQKPLESTNGSESRRRFDKKSQSQIIDLSQRENGKVSIETLIQNEHGSRGNKIYMSGPLLSSNSTDQMLRERDRKIQEYSRRARIDKCKGEKVGPHKY* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1301 706 SMART serkin_6 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1301 706 PANTHER CELL DIVISION PROTEIN KINASE 1 694 - -
Lja3g1301 706 MobiDBLite consensus disorder prediction 537 632 - -
Lja3g1301 706 Gene3D Transferase(Phosphotransferase) domain 1 225 458 - -
Lja3g1301 706 Pfam Protein kinase domain 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1301 706 PANTHER CYCLIN-DEPENDENT KINASE 1 694 - -
Lja3g1301 706 MobiDBLite consensus disorder prediction 35 50 - -
Lja3g1301 706 CDD STKc_CDK9_like 137 421 - -
Lja3g1301 706 MobiDBLite consensus disorder prediction 452 472 - -
Lja3g1301 706 MobiDBLite consensus disorder prediction 656 677 - -
Lja3g1301 706 Gene3D Phosphorylase Kinase; domain 1 131 224 - -
Lja3g1301 706 SUPERFAMILY Protein kinase-like (PK-like) 130 427 IPR011009 -
Lja3g1301 706 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
Lja3g1301 706 ProSiteProfiles Protein kinase domain profile. 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1301 706 MobiDBLite consensus disorder prediction 656 674 - -
Lja3g1301 706 MobiDBLite consensus disorder prediction 29 50 - -
Lja3g1301 706 MobiDBLite consensus disorder prediction 568 585 - -
Lja3g1301 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1301 Lja-Chr3 13611231 13620971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1301 129 464 Core Cell Cycle Gene Families AT5G10270 49.432 2.11e-109 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja3g1301 Pkinase 4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1301 - K08819 gmx:100775462 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1301 3 13611231 13620971 Lja3g1301 3 13611231 13620971 PCT