Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1299 ATGTCTCCACTTAAGCTCCTTGTCATTCTCCTTCACATTGTTACCATTCTGAGTTCTGTTTCCTCAACTGAATTTGTTTACAACACAAACTTCAACTCCACAAACACCATCCTATATGGAAATGCCATCATTGAGCACTCCATTCTGACTCTCACTAATGGCAGTTCCTTCTCCATAGGCCGCGCTTTTTACCCTCATAAAATACCTACCAAACCGTTCAACTCCTCCTCCACCCTTCTCCCCTTTGCAACCTCCTTCATTTTCTCGGTCGCCCCCATCAAACACTTCCTTCCCGGTCACGGCTTTGCCTTCCTTTTTACACCGTCAAGAGGATTAAACGGCACAACCTCAGCTGAGTATCTTGGTCTTTTCAATCGTACCAATGAAGGTAATCCAAAGAACCATGTTCTGGGAGTTGAGTTTGATACAATCAGAAATGAGGAAGAGTTCAATGACACAAACGGCAATCATGTTGGCGTTGATATAAACTCGCTTGAATCCTCCACATCACATGAAGCTGGCTACTGGGGTGGGAAAGATGACAATGAATTTGAGGTGTTGAGGATAATAAATGGAGAAAACTACCAGGTATGGATTGAATTTAAGCATTCCCAGCTTAACATAAGTATGGCTCGTGCAGGACAAAAAAGGCCGCGAGTGCCTCTTATCAGTACGAATGTTAACCTTTCCGAGGTTCTCATGGATGAAACTTATGTTGGGTTCTGCGCAGCAACAGGGAAAATAGTAGACAGTGTTAAGATTCTTGGTTGGAGTTTTAGCAATTCAAATTTTTCAATTGCACGAGGTTTAGCTGTAGGGATCACCAGTGTCGTCTGTGTGGGAAACGAGGCATTGGAAGATATTGAAGACTGGGAACTAGAGTACTGGCCACACAGGATTAGTTTCCATGAGATTGATGCAGCAACAAGAGGGTTCTCTGAAGAGAATGTGATTGCGATAGGAGGAAGCGGGAAGGTATATAAAGGGGTTTTGCAAGGAGCAGAGGTTGCAATCAAGAGAATCCCTCAGGAAAGAGAAGGAGGGATGAGAGAGTTTTTGGCTGAGGTTTCAAGCATAGGCAGAATGAAACACAGAAACTTAGTAGCATTAAGAGGTTGGTGCAAAGAGCAGAAAGGAACTTTGATTCTAGTCTATGACTTCATGAATAATGGAAGCTTAGACAAAAGGATCTTTGACTGTGAAGAGGGAAAGATGCTAACTTGGGAAGAGAGAATTGAAGTTTTGAAAAATGTAGCAGCAGGGATTCTATACCTGCATGAGGGTTGGGAAGTTAAGGTCTTGCATAGGGACATCAAAGCAAGCAATGTACTACTTGACAAGGACATGAAAGCTAGGTTAGGCGATTTCGGATTGGCGCTTATGCACGAGCACCAGGGACAAGTGGCGAGCACAACAAGAATACTAGGCACAGTGGGATACATTGCTCCTGAAGTAATTCGAACCGGAAGAGCCTCAACCATGTCTGATGTGTTTGGTTTTGGATTATTAGTACTGGAAGTAGTTTGTGGGAGAAGACCAATTGAAGAACATAAGCCAGGGCTAATTGAATGGGTTATGTCTTTAATGGTGCTTGGCCAATTGCACAATGCTGTTGATGAAAGGTTGAATGCTTGTGGGGGATACACCATTATGGAAGCTGAGAGATTGCTTAATTTGGGTTTAGTGTGTGCAAATTCAGACCCTAGTGTGAGGCCAACTATGATGCAGATTGTGAAAATGCTGGAGGAGGGTGATGAAGGAAGTGAATATTTGAGTTTGCTTGGGAAAATAAAATCAACTGCAATGTGGTCTAGAACTGAAGGTGCTTTTGACCAAATTAGGATATTCAGTTTTAATTCTAAGGCGTCCACAAGTTGCTCAGGTATCACTCCAGAATCAAATTCAGATACAACCCTTGAAGGCAGGTAA 1929 0.4292 MSPLKLLVILLHIVTILSSVSSTEFVYNTNFNSTNTILYGNAIIEHSILTLTNGSSFSIGRAFYPHKIPTKPFNSSSTLLPFATSFIFSVAPIKHFLPGHGFAFLFTPSRGLNGTTSAEYLGLFNRTNEGNPKNHVLGVEFDTIRNEEEFNDTNGNHVGVDINSLESSTSHEAGYWGGKDDNEFEVLRIINGENYQVWIEFKHSQLNISMARAGQKRPRVPLISTNVNLSEVLMDETYVGFCAATGKIVDSVKILGWSFSNSNFSIARGLAVGITSVVCVGNEALEDIEDWELEYWPHRISFHEIDAATRGFSEENVIAIGGSGKVYKGVLQGAEVAIKRIPQEREGGMREFLAEVSSIGRMKHRNLVALRGWCKEQKGTLILVYDFMNNGSLDKRIFDCEEGKMLTWEERIEVLKNVAAGILYLHEGWEVKVLHRDIKASNVLLDKDMKARLGDFGLALMHEHQGQVASTTRILGTVGYIAPEVIRTGRASTMSDVFGFGLLVLEVVCGRRPIEEHKPGLIEWVMSLMVLGQLHNAVDERLNACGGYTIMEAERLLNLGLVCANSDPSVRPTMMQIVKMLEEGDEGSEYLSLLGKIKSTAMWSRTEGAFDQIRIFSFNSKASTSCSGITPESNSDTTLEGR* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1299 642 ProSitePatterns Legume lectins beta-chain signature. 137 143 IPR019825 -
Lja3g1299 642 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 262 IPR013320 -
Lja3g1299 642 CDD lectin_legume_LecRK_Arcelin_ConA 23 262 IPR001220 GO:0030246
Lja3g1299 642 ProSiteProfiles Protein kinase domain profile. 312 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1299 642 CDD STKc_IRAK 318 583 - -
Lja3g1299 642 Gene3D Transferase(Phosphotransferase) domain 1 388 592 - -
Lja3g1299 642 Gene3D Phosphorylase Kinase; domain 1 281 387 - -
Lja3g1299 642 PANTHER - 280 629 - -
Lja3g1299 642 PANTHER - 1 270 - -
Lja3g1299 642 SMART serkin_6 312 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1299 642 PANTHER LECTIN RECEPTOR KINASE 280 629 - -
Lja3g1299 642 PANTHER LECTIN RECEPTOR KINASE 1 270 - -
Lja3g1299 642 Gene3D - 21 267 - -
Lja3g1299 642 SUPERFAMILY Protein kinase-like (PK-like) 288 582 IPR011009 -
Lja3g1299 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Lja3g1299 642 Pfam Protein kinase domain 314 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1299 642 Pfam Legume lectin domain 23 263 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1299 Lja-Chr3 13593897 13595933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1299 20 529 Receptor kinase-like Gene Family AT4G04960 54.152 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja3g1299 Pkinase 9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1299 - - gmx:100804553 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1299 3 13593897 13595933 Lja3g1300 3 13608092 13610119 PCT