Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1298 ATGTCTCCTCGTACCTCATGCTTCCTTTTCATCCTCAACACTGCTTTTCTTCTAGTTCTAACTTCAGTTTCAGCAACTGAATTTGTCTATAACAGAAACTTCAACTCCACCAACACAAAGCTCTATGGAAATGCCACCATCAAAGAATCCATTCTCACTCTCACTAACCAAACCTTTTTCTCCATAGGCCGTGCCTTTTACCCTCAAAGTGTTCCAATGAAGAAGCCTCACAATCACAACTCTTCCACCCTTCTTCCTTTTGCAACCTCTTTCATCTTCTCCATAGCTCCTTGCAAGAACTTCCCTGTAGCTCACGGTTTCGCTTTCGTTATCGCGCCCGTGATGGCTGTGAACGGAGCGCTTTCGGGGAATTATCTCGGGCTTTTTAACCGATCCTCTTCTGGTAACTCCTCCAACCATGTTTTTGCAGTTGAGTTTGATGATTTTCGAAACGAGGAGTTTAATGAGGAGAATGATAACCATGTGGGTGTCAACTTGAATTCAATGATTTCATTGTATTCTGAGCCTGCTGGGTTCTGGGGTGGGGAAAACGGTGACGATCTGGAGAAGTTGAAGCTGGCTAATGGTCAGAACTATCAGGTTTGGATAGAGTATGAGAATTCACAGATTAATGTTACTTTGGCACCTGCAGGGAAAAAGAAGCCTAAAAGACCATTGATTAGTAAGTATTTGAACCTTTCTGGTGTTTTGTTGGATGAAATGTATGTGGGATTTTCTGGAGCAACAGGAAGAATGGTGGATGTTTGTAGAATCCTAGCTTGGAGTTTTAGCCATTCAAATTTCTCAATTGGTGATGCTTTGAACACCAAGCATTTACCTTTATCAAATGGTTTCATTCTTGGTGTCATTTTTGGTGCACTGTTTGTCAAAAAAGAGGAAGAGGAAAAAATTGAAGATTGGGAATTGGAGTATTGGCCACAGAGGATCAGCTATCAGGAGATTTACGACGCGACAAACGGGTTCTCTGAAGAGAAAGTGATCGGCATAGGTGCGACCGGGAAAGTATACAAAGGAGTTTTGAAAGGGGTGGAAGTCGCGGTGAAGAGATTCAACCACGACACGCAGCAACACGGAATGAGAGAGTTTCTGGCAGAGATTTCAAGCCTAGGAAGAATGAAGCACAGGAACTTGGTTGGTTTCAGAGGATGGAGTAAAAGAAAAGGAGGGAAATTGATACTGGTGTATGATTACATGGAGAATGAGAGCTTGGATAAACGGATCTTCGAGTGCGAAGAGACCATGCTTCTGAGCTGGGAAGAAAGAAAAGGAGTTTTAGAAAATGTAGCTTGTGGAATTTTATACCTACATGAGGGCTGGGAGGTTGAGGTTTTACATAGAGACATCAAAGCAAGTAATGTTCTGCTTGAAAAGGACATGCATGCAAGATTAGGAGACTTTGGGCTTGCAAGGTTGCATCAAAAGGATCAAGTGGCTGAAACAACAAGAGTAATAGGGACTTTAGGGTACATGGCACCAGAGCTAGTCAAATTTGGGAAACCATCAACTGCAACTGATGTGTACAGTTTTGGAATATTAGTTTTAGAAGTGGTATGTGGGAGAAGACCTATTGTGGCGGATAAGCTGCCGTTGGTTGAATGGGTGTTTTCCCTTATGGAGAAAGGGGAATTGAGTTGTGCCATTGATGAGCGTTTGAAGGCTCAAAGTGGCTATAGAAATGAGGAAGCTGAGAGATTGCTTCACTTGGGTTTGTTATGTGCAAGTGTAGACCCTTGTGTTAGGCCAAGGATGAGGCAAGTGGTGAAAATGTTGGAGGGGATAAAATGCAGTGATGAGTGTAATGAAGAGTGTGTCCATGTCAATGTGAGTCTGATTGGGAAAATAAACTCTGCAGCATCATGGTCTAGGAGTTCTACAAGCTCTCCCCAAATGAAATTTCCAACCTTTGCTGAAATTTTCCCCTCCAAATATTATTCTACAGCATCTTTTTTAAGCATCTCTTGTAACAGCCCTCAGCCAGATTCAGATTTTGTATCAGAAGGAAGGTGA 2028 0.425 MSPRTSCFLFILNTAFLLVLTSVSATEFVYNRNFNSTNTKLYGNATIKESILTLTNQTFFSIGRAFYPQSVPMKKPHNHNSSTLLPFATSFIFSIAPCKNFPVAHGFAFVIAPVMAVNGALSGNYLGLFNRSSSGNSSNHVFAVEFDDFRNEEFNEENDNHVGVNLNSMISLYSEPAGFWGGENGDDLEKLKLANGQNYQVWIEYENSQINVTLAPAGKKKPKRPLISKYLNLSGVLLDEMYVGFSGATGRMVDVCRILAWSFSHSNFSIGDALNTKHLPLSNGFILGVIFGALFVKKEEEEKIEDWELEYWPQRISYQEIYDATNGFSEEKVIGIGATGKVYKGVLKGVEVAVKRFNHDTQQHGMREFLAEISSLGRMKHRNLVGFRGWSKRKGGKLILVYDYMENESLDKRIFECEETMLLSWEERKGVLENVACGILYLHEGWEVEVLHRDIKASNVLLEKDMHARLGDFGLARLHQKDQVAETTRVIGTLGYMAPELVKFGKPSTATDVYSFGILVLEVVCGRRPIVADKLPLVEWVFSLMEKGELSCAIDERLKAQSGYRNEEAERLLHLGLLCASVDPCVRPRMRQVVKMLEGIKCSDECNEECVHVNVSLIGKINSAASWSRSSTSSPQMKFPTFAEIFPSKYYSTASFLSISCNSPQPDSDFVSEGR* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1298 675 ProSitePatterns Protein kinases ATP-binding region signature. 334 355 IPR017441 GO:0005524
Lja3g1298 675 PANTHER LECTIN RECEPTOR KINASE 12 657 - -
Lja3g1298 675 PANTHER - 12 657 - -
Lja3g1298 675 ProSiteProfiles Protein kinase domain profile. 328 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1298 675 SUPERFAMILY Protein kinase-like (PK-like) 306 599 IPR011009 -
Lja3g1298 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Lja3g1298 675 SMART serkin_6 328 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1298 675 Gene3D - 24 277 - -
Lja3g1298 675 CDD STKc_IRAK 334 600 - -
Lja3g1298 675 CDD lectin_legume_LecRK_Arcelin_ConA 26 264 IPR001220 GO:0030246
Lja3g1298 675 Gene3D Transferase(Phosphotransferase) domain 1 405 620 - -
Lja3g1298 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 266 IPR013320 -
Lja3g1298 675 Pfam Legume lectin domain 26 267 IPR001220 GO:0030246
Lja3g1298 675 Pfam Protein kinase domain 329 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1298 675 Gene3D Phosphorylase Kinase; domain 1 296 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1298 Lja-Chr3 13590879 13592990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1298 23 551 Receptor kinase-like Gene Family AT4G04960 53.214 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja3g1298 Pkinase 2.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1298 - - gmx:100804025 1032.32