Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1292 ATGGTGGCTTCAGAAAGATTGGAACTTATTGCATTTCGGTGGTGGGTTGTTCTACTGTTACTGAGTCCTGTGGCGGGTCTCAGACCCTTAAGAGAGAGAAATCGATCATGGGGTGATGAGTGGCAGTTTACAAGAAAGGAAGAGAGTGACATAGGTCCATTTTCACAATGGAACATAACGGGAACTTACAAAGGGACTTGGAACTTTTTAGATGCCACAAATGGCTCTTCCAGATTCCCAGACATCCAAAAAACAAATGGCAATTCCGTTATTGAATTAGTTAGTACACCCACAAAGATAACCGGAGTACATTATGTCCATGGGGTAGTTATATTCCATGATGTGTTTGACAATGGATACAATGTTGGCGGTGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGGAGAGTTCAATCAGGATGAGGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTACTGCAAGATTCTTCACGAGATAAGAATTGGAGAAGAAAACATTCTCTGATCCGTGACATGGATAAACATTGTAATATTGAAATTGCTGCAAAGGTTTCACACTTGCCATCATCAAAAGATGAAGGCGAGCATGATTCTTTTCATCTAGAAGGATTAATGGAGAGTCCCTCAGCGGATGACAGTGGGGACTGCTTCTCACCGTTACTGTTAAATGCAACTTCTGTTAAAATTGAGGTCTACTACAACAAAGCAGTGAACTATACCTTGATGGTCACTTTTATCTCTTTCCTGCAAGTTCTTCTACTGATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGGGCGGCTAAGGTTTCAATTTTAATGATCGGCCAGCAAGCGATAATGGATGCCTATCTTTGCCTTTTACACCTGACTGCAGGAATATTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTCGTCTTCTCAATATTTGAAATGAGATATCTCCTTGCTATTTGGAAGGCAAATAGGCCTTTAAGTCATGGGGAAGGTTGGGAGACAATGAGGCGTGAACTTTCAGTTTTATACAGTCGATTCTATGGGATCCTGTTGGGAGGTATTCTACTCATGTATGAGTTCCATCACTATTTGAAGACTATTCTTCTTCTTATGTACTCCTTTTGGGTACCTCAGATAATCACCAATGTTATTCGTGATTCACGCAAACCATTGCATCCTCATTATATATTAGGGATAACTGTTACTCGGCTAGCAATACCATTATACATTTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCTGACAAGAGCTGGTGTGTTTGTTTGACTGTATTTATTGGGTTTCAAGCTGCAATTCTTCTACTTCAGCACTATCTGGGGTCGCGTTGGTTCATTCCTCGTCAGATTCTACCCGAGAAATACTGCTATTATAGGAGGTTTGATCAGGATACAAGACATGCTATGGACTGTGTTATTTGCATGACAGCCATTGATCTTTCCCAAGGAACTAATGATTGCATGGTAACACCTTGTGATCATTTCTTCCATTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGTCGCACTTTACCACCTGCTTAG 1668 0.4059 MVASERLELIAFRWWVVLLLLSPVAGLRPLRERNRSWGDEWQFTRKEESDIGPFSQWNITGTYKGTWNFLDATNGSSRFPDIQKTNGNSVIELVSTPTKITGVHYVHGVVIFHDVFDNGYNVGGAQIRVEGVYIWPFRQLRMVANSGKGEFNQDEDYILSNPYHLLGVFSSQVLQDSSRDKNWRRKHSLIRDMDKHCNIEIAAKVSHLPSSKDEGEHDSFHLEGLMESPSADDSGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSHGEGWETMRRELSVLYSRFYGILLGGILLMYEFHHYLKTILLLMYSFWVPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLTVFIGFQAAILLLQHYLGSRWFIPRQILPEKYCYYRRFDQDTRHAMDCVICMTAIDLSQGTNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRTLPPA* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1292 555 PANTHER RING ZINC FINGER PROTEIN 10 555 - -
Lja3g1292 555 Pfam Ring finger domain 504 549 IPR001841 -
Lja3g1292 555 SMART ring_2 505 548 IPR001841 -
Lja3g1292 555 SMART ringv_2 504 549 IPR011016 GO:0008270
Lja3g1292 555 SUPERFAMILY RING/U-box 485 553 - -
Lja3g1292 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 555 IPR013083 -
Lja3g1292 555 ProSiteProfiles Zinc finger RING-type profile. 505 549 IPR001841 -
Lja3g1292 555 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 10 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1292 Lja-Chr3 13532592 13539737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1292 482 553 C3H Transcription Factor Family AT1G74620 33.333 4.19e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1292 K23788 - gmx:100780140 1012.29