Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1290 ATGGACGGGTCGGAAGCAAAGGCTATGAGGAGCGACAAGGTGCAGCAGGTGACGATGAACGACCAGAACGGGTACCAGGAGGTAGATAAGAAGAAGAAAGGGAAAGGCTCTGCGGAGAAGTGCAACGCGGATCTTCACGACGCGAAGCAGTATCACAGGAGGCACAAGGTGTGTGAGTATCATGCTAAGGCTCAGGTGGTGCTTGTGGGCGGCACACGACAACGGTTCTGTCAGCAATGTAGCAGGTTCCATGAGTTAGGTGAATTTGATGACACAAAAAGAAGTTGCCGCAGGCGTTTGGCAGGACACAATGAACGGCGAAGAAAGAACTCTGAGTCTCAGGCTGCTGCAGAAGGATCAAGCCGCAAAGGGATGAAGGACAATCCAATCCAAGAAAATGCAGCAGCTTACAAACATTTCCAGATAAACATGAGTTCTGCTTAA 444 0.5023 MDGSEAKAMRSDKVQQVTMNDQNGYQEVDKKKKGKGSAEKCNADLHDAKQYHRRHKVCEYHAKAQVVLVGGTRQRFCQQCSRFHELGEFDDTKRSCRRRLAGHNERRRKNSESQAAAEGSSRKGMKDNPIQENAAAYKHFQINMSSA* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1290 147 MobiDBLite consensus disorder prediction 1 41 - -
Lja3g1290 147 Pfam SBP domain 38 109 IPR004333 GO:0003677
Lja3g1290 147 MobiDBLite consensus disorder prediction 100 135 - -
Lja3g1290 147 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 121 - -
Lja3g1290 147 MobiDBLite consensus disorder prediction 25 41 - -
Lja3g1290 147 SUPERFAMILY SBT domain 38 113 IPR036893 GO:0003677|GO:0005634
Lja3g1290 147 ProSiteProfiles Zinc finger SBP-type profile. 33 110 IPR004333 GO:0003677
Lja3g1290 147 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 121 IPR044817 GO:0003677
Lja3g1290 147 Gene3D - 35 97 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1290 Lja-Chr3 13519987 13521138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1290 38 133 SBP-box Gene Family AT1G53160 61.458 1.54e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja3g1290 SBP 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1290 - - ccaj:109810441 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1290 3 13519987 13521138 Lja3g4835 3 90379302 90381019 ECH
Lja3g1290 3 13519987 13521138 Lja3g1290 3 13519987 13521138 ECH
Lja3g1290 3 13519987 13521138 Lja6g3038 6 59184461 59186142 ECH
Lja3g1290 3 13519987 13521138 Lja4g3814 4 70648106 70651269 ECH