LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g1289	ATGCCGGCACAGAAGCGCTCCCTGCCTGACTCCGGCGACGATGGGGACACTTCGCCGCCGCTCCTCTATCACAACCGCCATGCCAAGCAACCACCGCACCGCAACCCACACTTGAAAGCCCACGGCGGTCAGCAGCAGGAGCAAGACGAGGAGGACGATGATGAAGACCAGCAGGAGGAGGATGAGGAGGAAGACGACGAAGAGGAGGATGGAGAGGAAGAGGAAGAGGAGGAGGATGAGGAGGATGCTGAAGAAGATGAAGATGAAGCTGGGCAACGCCATAATCACGACGAGGATCAATCACAGGATTCCGACGAATCTCCATCTTCTGACTCTGAAGAAAAACCTGAATTTGTGTATGTACCAGTTCAGGATATCCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACGAGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAGTGCATTGACAAATCGATGCGACTAGGGAATAATGAATGCCCTGCTTGCCGCACACACTGTGCCAGTCGTCGCTCTTTGAGAGATGATCCAAACTACGATGCCCTTATTGCTTCTTTATATCCAGACATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCTATAGCAAAAATAGTTCAACGGCAATCTGAAGCACTGGTTAAGAGGCGTAGAGATACACCAGGTGCATTTGCACCAAGATCACAGCGTAATCAACGGAACATTCATTCTAGGAGACAGAACCAAGTGATTGATATTCAAGGATCTGAAGATAATGAGGAGGAAAATGACAACAATGAAAAAGACTCATCTGCTGATGATGAGCGGTGCACAGAACCCCCGCAGAGAAGGCGAAAGAGATGGACCAGAGTTCGTCCCTCTCAGCCATCATCATCTATGGCAGGTCCTGATGGTGGATGTGTAGACAGTGATATAGATGTAAGTAGAGAAAATCGAGGAACTTCAAGGCAGGTGTCAAAACCTAGAAAGCTTACTTGGGGAAGGGGTGGTTTTAGGAGTAACACCCGACATGGCAGTAGTGGTGGTAGCAATAGCAAAAGTTCCCGCAGTGGTCGATTGGCTAAGCTGGTTGGTCATCTTAGAAGCTTGGATGAAAATATTGATGAGTTTGATGTCCATCTCTTGCTTGTTTCCCTGGACAAAAGTACTCCAAGTTTGGAGCAGCCACACCTTTGCTGTCGACCAACTTTGACTGTCAAGCACCTTTACGAATATGTTGCCCGTCAGACACCTTTGCCAGTTGAAGCAGTAGAGATAATGGCAGTTAAAGGATGCTGCAGTACAAATCGCAACGAGTCAGCTGATGATGCTTCAGCCCTGGTTTGTGATGAGCTAACAACGCTGGCTATAGATCCTCACAAAGATGAACTGGAAATTTTGCAAGAACATGAATCCCTGGCTGAGATTAGATCCAAGTGCATATCTAAAAGGGATCATTTGATTCTGGCATACAGGCAAAAGGAGGCATTATAG	1536	0.4707	MPAQKRSLPDSGDDGDTSPPLLYHNRHAKQPPHRNPHLKAHGGQQQEQDEEDDDEDQQEEDEEEDDEEEDGEEEEEEEDEEDAEEDEDEAGQRHNHDEDQSQDSDESPSSDSEEKPEFVYVPVQDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIASLYPDIEKYEEEELEFREEEKNRNKQIQASIAKIVQRQSEALVKRRRDTPGAFAPRSQRNQRNIHSRRQNQVIDIQGSEDNEEENDNNEKDSSADDERCTEPPQRRRKRWTRVRPSQPSSSMAGPDGGCVDSDIDVSRENRGTSRQVSKPRKLTWGRGGFRSNTRHGSSGGSNSKSSRSGRLAKLVGHLRSLDENIDEFDVHLLLVSLDKSTPSLEQPHLCCRPTLTVKHLYEYVARQTPLPVEAVEIMAVKGCCSTNRNESADDASALVCDELTTLAIDPHKDELEILQEHESLAEIRSKCISKRDHLILAYRQKEAL*	512

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g1289	511	SMART	ring_2	132	171	IPR001841	-
	Lja3g1289	511	ProSiteProfiles	Zinc finger RING-type profile.	132	172	IPR001841	-
	Lja3g1289	511	MobiDBLite	consensus disorder prediction	1	116	-	-
	Lja3g1289	511	MobiDBLite	consensus disorder prediction	283	298	-	-
	Lja3g1289	511	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED	1	509	-	-
	Lja3g1289	511	MobiDBLite	consensus disorder prediction	89	116	-	-
	Lja3g1289	511	MobiDBLite	consensus disorder prediction	232	372	-	-
	Lja3g1289	511	Pfam	Zinc finger, C3HC4 type (RING finger)	131	171	-	-
	Lja3g1289	511	Coils	Coil	57	93	-	-
	Lja3g1289	511	ProSitePatterns	Zinc finger RING-type signature.	148	157	IPR017907	-
	Lja3g1289	511	CDD	RING-HC_RING1_like	132	172	-	-
	Lja3g1289	511	Coils	Coil	198	229	-	-
	Lja3g1289	511	MobiDBLite	consensus disorder prediction	324	338	-	-
	Lja3g1289	511	MobiDBLite	consensus disorder prediction	47	88	-	-
	Lja3g1289	511	MobiDBLite	consensus disorder prediction	353	372	-	-
	Lja3g1289	511	SUPERFAMILY	RING/U-box	123	187	-	-
	Lja3g1289	511	PANTHER	OS11G0578200 PROTEIN	1	509	IPR044592	-
	Lja3g1289	511	MobiDBLite	consensus disorder prediction	246	268	-	-
	Lja3g1289	511	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	80	202	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g1289	Lja-Chr3	13508504	13516818	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g1289	124	195	C3H Transcription Factor Family	AT3G23060	33.333	7.72e-07	49.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g1289	K10695		-	gmx:100776547	652.899