Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1288 ATGAGCGACCAACAACACAAGTTTCACCCCTCCCACCAACTCCTCTCCCCAAAGAAGCCATCATCCCTCGGAGTACAAATCGACGTACCACCAAGAAAGCAGCTCCTCACCTGCCGCGCCACCGTTGACACCTCCGACATGTACTCCGACGACACCATTCTCCAAAAATACCTCCCCTACAAAAACTCCTCCGACTCTGACGACTCGGAGGACCCCTACTCATCCGACCGCTTTCGGATGTATGAGTTCAAGGTCCGCCGCTGTACTCGCAGCCGCAGCCACGATTGGACTGACTGCCCTTTCGCTCACCCGGGCGAAAAGGCACGTCGTCGCGACCCTCAGCGGTTTCACTACTCCGGGATTGTCTGCCCGGAGTATCGCCGCGGAGGGTGCAGCCGCGGCGACAGCTGCGAGTACGCTCACGGCGTGTTCGAGTGCTGGCTGCACCCTTCGCGGTACAGGACAGAAGCCTGTAAGGACGGGAAAAATTGCAAAAGGAAGGTGTGTTTCTTCGCTCACACCCCTCGCCAGCTTAGAATCTTGCCGGTGACTTCGAATGAAATCTCTTGCGGCAAGAAGAGCAAGCTGTTAAGCCCTGTTTCCAGATCAAACAGCTGTTGCGCGTTTTGCCATTGCGGCGGTGGTGGTGGTGGTTCCACTGCTTCACCGACTTCCACGCTTTTTGGGTTGTCCCATTTTTCATCGCCGCCGCTGTCTCCGTCGTCATCTGCGGCCTCTCCGCCGCTGTCTCCGTTGAAACCCCGAAATGGGGTGTGTCCTGTTTCTCGCTATGGTAGGCATGCTAGCCTTGCGAGCTACAAGGATGTGCTAGCCGAGTTGATGAATTCCTTTGAGGGGTTGAGTTTTGATCAACAAAAGATGTTTACTCAGAACCCGACAAGCTTCAAGGGGGTGTATTCGAATGAGAACAGTTTCTATAGTAACGACAACAAGGTTGTTGCTGGTGACATGAATGGGTGTTGTCCTGCCCCGGATCTCGGGTGGGTGAATGACCTGTTGATGTGA 1026 0.5497 MSDQQHKFHPSHQLLSPKKPSSLGVQIDVPPRKQLLTCRATVDTSDMYSDDTILQKYLPYKNSSDSDDSEDPYSSDRFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPQRFHYSGIVCPEYRRGGCSRGDSCEYAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSNEISCGKKSKLLSPVSRSNSCCAFCHCGGGGGGSTASPTSTLFGLSHFSSPPLSPSSSAASPPLSPLKPRNGVCPVSRYGRHASLASYKDVLAELMNSFEGLSFDQQKMFTQNPTSFKGVYSNENSFYSNDNKVVAGDMNGCCPAPDLGWVNDLLM* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1288 341 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Lja3g1288 341 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Lja3g1288 341 Gene3D - 117 180 - -
Lja3g1288 341 MobiDBLite consensus disorder prediction 1 26 - -
Lja3g1288 341 Pfam CCCH-type zinc finger 122 142 IPR041367 -
Lja3g1288 341 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 26 340 - -
Lja3g1288 341 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Lja3g1288 341 PANTHER UNKEMPT FAMILY MEMBER 26 340 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1288 Lja-Chr3 13502576 13504200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1288 73 277 C2H2 Transcription Factor Family AT5G12850 45.631 1.43e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja3g1288 zf-CCCH 3.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1288 K23047 - gmx:100787049 370.548