Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1286 ATGCATCAGACATTTAATGAAACTCATGTATTCTGTTTTGTCCACTACCATAATCGTTATGTTTACATCAATGATGATGAATCACCTCATAATGTTCACTGTGATAATCGCATATCAAACAAAAAATATACTCTATTGAACTTTCTTCCAAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAATCAGTACTTTTTGCTGATAGCTTGCCTGCAGCTATGGCCTCTCATTACTCCAGTAAATCCTGCCAGTACGTGGGGTCCACTTATCTTTATTTTTGCAGTCTCTGCATCAAAAGAGGCATGGGATGATTACAATAGAAATCTTTCAGACAAAAAGGCAAATGAGAAGGAAGTATGGGTTGTCAAGAAGAGCATCAAGAAACTTATACAAGCCCAGGATATTCATGTAGGTAATATTGTATGGCTACGCGAAAATGATGAAGTGCCCTGTGACCTTGTTTTGATCGGAACCTCTGATCCTCAAGGAGTTTGCTATGTAGAGACTTCTGCTATGGATGGTGAAACTGATCTGAAGACACGGCTCATACCTTCTGCTTGCATGGGAATTGATGTTGAACTATTGCACAAAATTAAGGGTGTTATTGAGTGTCCCAATCCAGATAAAGACATCAGAAGATTTGATGCAAACATGCGGTTGTACCCCCCGTTTATTGACAATGATATATGCCCTTTAACGATTAAAAACACAATTCTTCAGTCATGTTACTTGAGAAATACTGAGTGGGCATGTGGAGTGGCTGTTTATACAGGCAACGAAACCAAACTGGGCATGAGTAGAGGTATCCCAGAACCAAAACTCACTGCTATGGATGCCATGATCGACAAGTTGACCGGTGCTATATTTGTATTCCAAATTGTTGTTGTTATGGTTCTTGGCATAGCTGGTAACGTTTGGAAGAATACAGAAGCAATGAAACAATGGTATGTTCTATACCCTCACGAAGGCCCTTGGTATGAACTGTTGGTAATCCCTTTGCGTTTCGAGCTTCTTTGTTCTATTATGATACCCATTTCAATTAAGGTATCTCTGGATTTGGTGAAGAGCTTATATGCAAAGTTTATTGACTGGGACCATCAAATGATTGACGTAGAGACCAGTATTCCATCCCATGCAACAAATACAGCGATAAGTGAAGACCTGGGACAAGTCGAGTACATTTTAACTGACAAAACAGGCACCCTGACTGAGAATAAGATGATATTTAGAAGATGTTGTATTAATGGCATTTTCTATGGAAATGATAATGGAGATGCATTGAAAGATGCAGAGCTTCTTAATGCTGTTTCCAGCGGTTCTTCTGATGTTGCACGATTTCTTACAGTTATGGCAATATGTAATACTGTCATACCTGTGCGAAGCAAAACTGGAGACATCTTGTATAAGGCACAGTCTCAGGATGAAGAGGCTCTGGTTCATGCTGCTGCTCAGCTGCATATGGTTTTCTTCAACAAGAGTGGAAACATTCTCGAAGTCAACTTCAACTCTTCTGTACTTCAGTATGAAGTCCTGGAAACCTTGGAGTTTACCTCTGATAGGAAAAGAATGTCAGTAGTATTGCAAGATTGCCAAAATGGGAAGATCCTTCTCCTATCAAAAGGAGCAGATGAGGCTTTGCTTCCATATGCTCGTTCTGGGCAGCAAACCCGGCATTTTATTGAAGCTGTGGAGCAATATTCTCACTTGGGTCTACGGACGCTATGTATTGCTTGGCGTGAGTTAAGTAAAGACGAGTATCGAGAATGGTCTTTGATGTTTAAAGAGGCTAGTAGCACTTTAGTTGATAGGGAGTGGAGAGTAGCTGAGGCATGCCAACGATTAGAACATGACTTTGAAATTCTTGGTGTAACAGCAATAGAGGATCGTTTACAGGATGGAGTTCCTGAAACAATAGAAACACTAAGAAAAGCTGGAATAAATTTTTGGATGCTAACAGGAGACAAGCAGAATACTGCAATACAAATTGCCCTGTCATGTAATTTTATCTCTCCAGAACCGAAGGGACAGCTTCTATTAATTGATGGGAAAACAGAGGATGAAGTTTGCAGAAGCTTAGAGAGAGTGCTTCGTACAATGCGGATAACTACCTCTGAACCCAAGGATGTGGCTTTTGTTATTGATGGCTGGGCACTTGAGATTGCACTTAACCACTACCGTAAAGCTTTCACTGAGCTGGCTGTATTGTCAAGGACAGCTATATGTTGTCGTGTGACCCCATCACAAAAAGCACAGCTTGTTCAGATCTTAAAATCATGTGATTATAGAACCTTGGCAATTGGCGATGGTGGGAATGATGTAAGGATGATTCAACAAGCTGATATTGGTGTGGGCATCAGTGGCAGAGAAGGATTGCAGGCAGCAAGAGCGGCTGATTACAGTATTGGAAAGTTTAGATTCCTGAAGAGATTAATTCTGGTCCATGGCCGGTATTCTTACAACCGTACAGCATTTCTTTCTCAATATTCATTCTACAAGTCCCTACTAATATGCTTCATCCAAATCTTTTTTTCATTTATTTCAGGTGTCTCTGGAACTAGCCTCTTCAATTCTGTTAGCTTGATGGCTTATAATGTTTTCTACACTAGTATTCCTGTTCTTGTCAGTGTACTTGACAAAGATCTCAGTGAGGAAACTGTGTTGCAGCATCCTCAAATTTTATTTTATTGCCAAGCGGGAAGGCTTCTAAATCCTAGTACATTTGCTGGATGGTTTGGCCGATCTCTCTTCCATGCAATAGTTGTGTTTGTAATAAGCATACATGCCTATGCTTATGATAAAAGTGAAATGGAGGAGATTTCAATGGTGGCACTTTCCGGTTGTATATGGTTGCAAGCTTTTGTGGTAACAATGGAGACCAATTCCTTTACAATATTGCAACATGCTGCTATATGGGGTAACTTGGTTGGGTTTTATGTCATCAACTGGATGTTCAGTGCTCTTCCTTCATCAGGGATGTATACAATCATGTTTCGGTTGTGTCGACAACCATCATATTGGATAACAATTTTTCTCATGACTGCAGCCGGAATGGGTCCAATTCTAGCCATCAAGTACTTTCGATATACATATAGGTCAAGCAAAATCAATGCACTTCAGCAGGCTGAACGCCAAGGGGGACCAATTTTGTCTCTTGGCACCATTGAGCCTCAGCCCAGATCTATAGAGAAAGATGTTTCTACCTTGTCAATAACACAACCCAAAATCAGAAATCCTGTTTATGAACCTCTTTTATCAGATTCTCCAAATTCCACCAGAAGATCTTTTGGAGCAGCGACACCATTTGATTTTTTTCAGTCTCAGTCAAGATTATCACTTTCTAGTAGCTACACAAGAAATTGCAAGGACAACTGA 3372 0.4027 MHQTFNETHVFCFVHYHNRYVYINDDESPHNVHCDNRISNKKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSASKEAWDDYNRNLSDKKANEKEVWVVKKSIKKLIQAQDIHVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVETSAMDGETDLKTRLIPSACMGIDVELLHKIKGVIECPNPDKDIRRFDANMRLYPPFIDNDICPLTIKNTILQSCYLRNTEWACGVAVYTGNETKLGMSRGIPEPKLTAMDAMIDKLTGAIFVFQIVVVMVLGIAGNVWKNTEAMKQWYVLYPHEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDHQMIDVETSIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCINGIFYGNDNGDALKDAELLNAVSSGSSDVARFLTVMAICNTVIPVRSKTGDILYKAQSQDEEALVHAAAQLHMVFFNKSGNILEVNFNSSVLQYEVLETLEFTSDRKRMSVVLQDCQNGKILLLSKGADEALLPYARSGQQTRHFIEAVEQYSHLGLRTLCIAWRELSKDEYREWSLMFKEASSTLVDREWRVAEACQRLEHDFEILGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLLIDGKTEDEVCRSLERVLRTMRITTSEPKDVAFVIDGWALEIALNHYRKAFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQIFFSFISGVSGTSLFNSVSLMAYNVFYTSIPVLVSVLDKDLSEETVLQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIVVFVISIHAYAYDKSEMEEISMVALSGCIWLQAFVVTMETNSFTILQHAAIWGNLVGFYVINWMFSALPSSGMYTIMFRLCRQPSYWITIFLMTAAGMGPILAIKYFRYTYRSSKINALQQAERQGGPILSLGTIEPQPRSIEKDVSTLSITQPKIRNPVYEPLLSDSPNSTRRSFGAATPFDFFQSQSRLSLSSSYTRNCKDN* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1286 1123 SUPERFAMILY Calcium ATPase, transmembrane domain M 31 1031 IPR023298 -
Lja3g1286 1123 Pfam Phospholipid-translocating P-type ATPase C-terminal 794 1031 IPR032630 -
Lja3g1286 1123 Gene3D - 92 267 - -
Lja3g1286 1123 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 26 346 - -
Lja3g1286 1123 Pfam E1-E2 ATPase 115 309 - -
Lja3g1286 1123 Gene3D - 618 806 IPR023214 -
Lja3g1286 1123 Gene3D - 461 601 IPR023299 GO:0000166
Lja3g1286 1123 SFLD Haloacid Dehalogenase 378 817 - -
Lja3g1286 1123 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 733 850 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g1286 1123 Pfam Cation transport ATPase (P-type) 452 548 - -
Lja3g1286 1123 SUPERFAMILY HAD-like 384 810 IPR036412 -
Lja3g1286 1123 ProSitePatterns E1-E2 ATPases phosphorylation site. 397 403 IPR018303 -
Lja3g1286 1123 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 401 1122 - -
Lja3g1286 1123 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 401 1122 - -
Lja3g1286 1123 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 26 346 - -
Lja3g1286 1123 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 441 1039 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Lja3g1286 1123 PRINTS P-type cation-transporting ATPase superfamily signature 766 785 - -
Lja3g1286 1123 PRINTS P-type cation-transporting ATPase superfamily signature 168 182 - -
Lja3g1286 1123 PRINTS P-type cation-transporting ATPase superfamily signature 395 409 - -
Lja3g1286 1123 PRINTS P-type cation-transporting ATPase superfamily signature 644 654 - -
Lja3g1286 1123 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 402 585 IPR023299 GO:0000166
Lja3g1286 1123 SUPERFAMILY Calcium ATPase, transduction domain A 117 264 IPR008250 -
Lja3g1286 1123 SFLD p-type atpase 378 817 IPR044492 -
Lja3g1286 1123 CDD P-type_ATPase_APLT 35 923 - -
Lja3g1286 1123 Pfam Phospholipid-translocating ATPase N-terminal 21 86 IPR032631 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1286 Lja-Chr3 13478811 13492562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1286 18 1123 Primary Pumps ATPases AT5G44240 85.895 0.0 1997
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1286 K01530 - gmx:100786505 2070.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1286 3 13478811 13492562 Lja3g1286 3 13478811 13492562 ECH