Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1276 ATGGCGTCGCTGTTCAAGGATCTCACGAAGCTCTCGGCGTATCGAGATAGAAGATTCCCTGGAACGCAAGATGAGTTTGAGCAAGCTCTTCTGGCTTCCACCACCGTTTACGTCGGGAACATGTCGTTCTACACCACGGAGGAGCAAGTTTACGAGCTCTTCTCTCGAGCTGGAGAAATCAAGAAGATCATCATGGGCTTGGACAAGAATACCAAAACCCCCTGCGGTTTTTGTTTCGTTCTATATTACTCTCGTGAAGATACTGAGGATGCTTGCAAGTACGTAAGTGGGACGATACTGGATGATCGTCCTATTCGTGTTGATTTTGACTGGGGATTTCAGGAAGGAAGACAATGGGGTCGTGGTCGTAGTGGTGGCCAGGTCCGTGATGAATATCGCACTGATTATGATCCTGGTAGAGGTGGTTATGGAAAGTTGGTCCAGAAAGAGTTAGAAGCACAAAGGCAGCTTGTGGATTATGGTTCTGGGTCTTTGGGATCTTTCCCTCCAATGGTTTCAACTTCCTATGGTAGACACGGCAGAAACCATGGTCACGGTGGTTCCCATCGGCCTGGTAGAGATTACCATAGGAAGAGACACAGGGATGATGACCATCACACAAACGAGTCCTCAAAAAGAACATCAGATCATGAATCCCGGAGGAACTCTGACCATGAATCTCGACCGGAAAAAAATCCACGATTTCGTGAGAGTGGAGATTCTGATGATGAGGAGGAAGATGATAGAAAAAGACGGTCTTAA 762 0.4724 MASLFKDLTKLSAYRDRRFPGTQDEFEQALLASTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYVSGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGSGSLGSFPPMVSTSYGRHGRNHGHGGSHRPGRDYHRKRHRDDDHHTNESSKRTSDHESRRNSDHESRPEKNPRFRESGDSDDEEEDDRKRRS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1276 253 CDD RRM_NCBP2 36 113 IPR034148 -
Lja3g1276 253 Gene3D - 6 150 IPR012677 -
Lja3g1276 253 MobiDBLite consensus disorder prediction 182 196 - -
Lja3g1276 253 SMART rrm1_1 35 108 IPR000504 GO:0003723
Lja3g1276 253 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 213 - -
Lja3g1276 253 MobiDBLite consensus disorder prediction 124 138 - -
Lja3g1276 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Lja3g1276 253 SUPERFAMILY RNA-binding domain, RBD 28 144 IPR035979 GO:0003676
Lja3g1276 253 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 213 IPR027157 GO:0000339|GO:0005846|GO:0045292
Lja3g1276 253 MobiDBLite consensus disorder prediction 119 143 - -
Lja3g1276 253 MobiDBLite consensus disorder prediction 161 253 - -
Lja3g1276 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Lja3g1276 253 MobiDBLite consensus disorder prediction 197 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1276 Lja-Chr3 13430678 13434464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1276 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 1.33e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1276 K12883 - gmx:100789535 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1276 3 13430678 13434464 Lja3g1276 3 13430678 13434464 ECH