Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1273 ATGCTCACTGTGTCGCCTTTGAAGAGCACAATGGAGATCATGGAGAATTTTTCAATCGGAGAAGGTCATCATCATGTTGACTTTGCTGACCTTTCAGATGGGAACTTGTTGGAATGCATTGACTTCGACGACCTCTTCGCCGGCATCGATGTCTTACCGGATCTGGAGGTGAACATGGAAATGCTTGCTGAGTTCTCAGTCAGCAGTGGCAGCGATATTGAGTTATCGGTTTCGGGTGCAAATAGCAAATCTGATTGTGATAGGAATGATTGTTTAGTTACTGAGAAGGAAAAACAAGATGAAGAATATAAAGGGGCTTCTTCAGATTCTTCTGGTAGCAATTCAGGGTCTGAGGAGATAGTGAGCAAAAGAGACCAATCAGCCGAGGCGAATCCATCTCCTAAGGAAGGTGACAAAGGAAGAAAATCATCATCATCAGCTCAATCAAAGAATCCTCAAGGGAAGAGAAAGGTGAAAGTGGATTGGACACCAGAATTGCACAGGCGATTCGTGCAAGCAGTGGAACAGCTTGGAGTAGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGACTGCCTCACTCGCCATAACATTGCTAGCCACCTTCAAAAATATCGATCGCATAGGAAGCATTTACTAGCGCGTGACGCTGAAGCAGCAAGATGGAGTCAACGGAGGCAAGTGTTTGGTGGTGGAGGAGGAGCAGGGAAGAGAGATATAAACCCTTGGGTTGCACCCACCATGGGTTTCCCTCCCAATCACATGACACCACCACCAATGCACCATTTTAGACCTTTACATGTTTGGGGCCATCATATGGACCACCACTCCTTCATGCACATGTGGCCTAAACATCCACCGCCACCATATGCACCACCACCACCAGCATGGCACCAAAGGGCTCCAAACGCACCAACACCAGGAACTCCGTGTTTTCCACAACCTCTGACAACAACGAGATTTGGAGCTCCAACTGTTCCGGGCATTCCACCACCACCACCACCTCGCGCCATTGGCGTCCTCGCCGGGCAAACACCTCCTCCACCACCCCTCTTCGACTTTCATCCGTCAAAGGAAAGCATTGATGCAGCCCTTGGTGATGTTTTATCTAAACCATGGTTGCCACTGCCTCTTGGCCTTAAAGCTCCAGCACTTGATGGTGTCATTGGTGAATTGCAGAGACAAGGAGTTCCCAGACTTCCACCCTCTTGTGCTTGA 1227 0.4849 MLTVSPLKSTMEIMENFSIGEGHHHVDFADLSDGNLLECIDFDDLFAGIDVLPDLEVNMEMLAEFSVSSGSDIELSVSGANSKSDCDRNDCLVTEKEKQDEEYKGASSDSSGSNSGSEEIVSKRDQSAEANPSPKEGDKGRKSSSSAQSKNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLARDAEAARWSQRRQVFGGGGGAGKRDINPWVAPTMGFPPNHMTPPPMHHFRPLHVWGHHMDHHSFMHMWPKHPPPPYAPPPPAWHQRAPNAPTPGTPCFPQPLTTTRFGAPTVPGIPPPPPPRAIGVLAGQTPPPPPLFDFHPSKESIDAALGDVLSKPWLPLPLGLKAPALDGVIGELQRQGVPRLPPSCA* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1273 408 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 408 - -
Lja3g1273 408 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 157 211 IPR006447 GO:0003677
Lja3g1273 408 MobiDBLite consensus disorder prediction 106 121 - -
Lja3g1273 408 MobiDBLite consensus disorder prediction 95 161 - -
Lja3g1273 408 Pfam Myb-like DNA-binding domain 160 209 IPR001005 -
Lja3g1273 408 Gene3D - 154 215 - -
Lja3g1273 408 MobiDBLite consensus disorder prediction 122 143 - -
Lja3g1273 408 SUPERFAMILY Homeodomain-like 155 214 IPR009057 -
Lja3g1273 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 213 IPR017930 -
Lja3g1273 408 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 408 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1273 Lja-Chr3 13411222 13415850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1273 29 290 G2-like Transcription Factor Family AT5G44190 47.566 1.85e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja3g1273 Myb_DNA-binding 5.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1273 - - lja:Lj3g3v2812210.1 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1237 3 12982419 12986485 Lja3g1273 3 13411222 13415850 PCT