Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g1270 | ATGGGTGTGGACTACTACAATGTCCTGCATGTTGATAAGACTGTAAACGAGGATGATCTTAAGAAGGCTTACAGGAAGCTAGCCATGAAATGGCACCCTGATAAGAACCCCACTAACAAGAAAGAAGCTGAAGCCAAATTCAAACAGATTTCAGAAGCCTATGATGTGTTGAGTAATTCTGAGAAGAGGGCTGTGTATGATCAGTATGGGGAAGAGGGGTTGAAGGGTCAGGTGCCACCTCCTGATGCTTCTGGTGGTGAAGGAACCGCTTTCTTTTTCGACTCCGGAGGTATGTCGTCGTCGTTTCAATTCAATAACCGGAATGCCGATGACATTTTTCAGGAGTTTTTTGGGTTCAACCCCTCTGGGGGCATGGGAAGGGGTGCTGGTGCTGGTGCTGGTGCTAGTGCTGGCGGCGGCGGTGGTGGCAGAGGAATGAGGCCGAGGGTCCCTAATGAGATGTTTCCTGACGACTTATTTGCATCTTTTCCGGAAGGAGGAGGACAAGGTGATGGTCGTCGCAAGGCTCCTCCCATTGAGAACATGGTGCCCTGCACTATGGAGGAGATATACAAAGGGACCACAAAGAAGATGAAGATCTCTAGGGAAATTATTGAGGCCACTGGAAAAGTCTCGCAGATGGAGGAGATCTTGACTATTAATGTCAAGCCTGGTTGGAAGAAGGGGACGAAGATCACCTTCGAGGAGAAGGGAAATGAGCAACCAAACATGATACCTGCGGACCTTGTTTTCACCATCGATGAAAAGCCGCACAATGTTTTCACTCGTGATGGAAATGATCTGATTTTCACTCAGAAAATATCTCTTCTAGAAGCTTTAACTGGCTGTACAGTGAACCTCACTACACTGGATGGTAGAACCCTGACTGTACCAATCAACAATGTTGTTCATCCTGATTATGAGGAGGTCCTTCCGAGAGAAGGAATGCCGCTCCCAAAGGATCCAACAAAGAGAGGAAACTTGAAAATAAAGTTCAACATCAAATTCCCAATGCGGATCACTGCAGAACAGAAGGCAGGAATGAAGAAACTGCTGGCTCCCTGA | 1065 | 0.4723 | MGVDYYNVLHVDKTVNEDDLKKAYRKLAMKWHPDKNPTNKKEAEAKFKQISEAYDVLSNSEKRAVYDQYGEEGLKGQVPPPDASGGEGTAFFFDSGGMSSSFQFNNRNADDIFQEFFGFNPSGGMGRGAGAGAGASAGGGGGGRGMRPRVPNEMFPDDLFASFPEGGGQGDGRRKAPPIENMVPCTMEEIYKGTTKKMKISREIIEATGKVSQMEEILTINVKPGWKKGTKITFEEKGNEQPNMIPADLVFTIDEKPHNVFTRDGNDLIFTQKISLLEALTGCTVNLTTLDGRTLTVPINNVVHPDYEEVLPREGMPLPKDPTKRGNLKIKFNIKFPMRITAEQKAGMKKLLAP* | 355 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g1270 | 354 | CDD | DnaJ_C | 183 | 337 | - | - | |
| Lja3g1270 | 354 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 352 | - | - | |
| Lja3g1270 | 354 | CDD | DnaJ | 4 | 59 | IPR001623 | - | |
| Lja3g1270 | 354 | Pfam | DnaJ domain | 4 | 67 | IPR001623 | - | |
| Lja3g1270 | 354 | PANTHER | DNAJ HEAT SHOCK FAMILY PROTEIN | 1 | 352 | - | - | |
| Lja3g1270 | 354 | SUPERFAMILY | Chaperone J-domain | 3 | 73 | IPR036869 | - | |
| Lja3g1270 | 354 | Coils | Coil | 40 | 60 | - | - | |
| Lja3g1270 | 354 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 173 | 269 | IPR008971 | GO:0006457|GO:0051082 | |
| Lja3g1270 | 354 | Gene3D | - | 258 | 337 | - | - | |
| Lja3g1270 | 354 | PRINTS | DnaJ domain signature | 62 | 81 | IPR001623 | - | |
| Lja3g1270 | 354 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Lja3g1270 | 354 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Lja3g1270 | 354 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Lja3g1270 | 354 | SMART | dnaj_3 | 3 | 62 | IPR001623 | - | |
| Lja3g1270 | 354 | Gene3D | - | 176 | 257 | - | - | |
| Lja3g1270 | 354 | Gene3D | DnaJ domain | 3 | 130 | IPR036869 | - | |
| Lja3g1270 | 354 | ProSitePatterns | Nt-dnaJ domain signature. | 47 | 66 | IPR018253 | - | |
| Lja3g1270 | 354 | ProSiteProfiles | dnaJ domain profile. | 4 | 70 | IPR001623 | - | |
| Lja3g1270 | 354 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 260 | 346 | IPR008971 | GO:0006457|GO:0051082 | |
| Lja3g1270 | 354 | Pfam | DnaJ C terminal domain | 181 | 337 | IPR002939 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja3g1270 | Lja-Chr3 | 13341121 | 13344798 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja3g1270 | 5 | 69 | C2H2 Transcription Factor Family | AT1G74250 | 37.681 | 4.24e-08 | 53.1 |