Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1268 ATGACAGCTGAGTGCAGTTACCCTGAAGACAATGATAGCATCATTGTGGAGAGGCGCAAAGATAGCTTAATCAGAACTTGTCCTACATGTGGGCACCATGTCAAGTACCAAGATCAGGGTGGTGGAATTCATGACTTACCTGGACTGCCTGCTGGAGTGAAGTTTGATCCAACTGATCAGGAGATTCTTGAACATTTGGAAGCGAAGGTTCGCTCTGATATTCACATGCTTCACCCTTTAATTGATGAGTTCATTCCTACTCTTGAAGGAGAGAATGGAATCTGTTGTACCCATCCAGAGAAGTTGCCAGGAGTTGGCAAAGATGGCCAGATTCGCCATTTCTTTCACCGGCCATCGAAAGCCTACACAACAGGAACAAGGAAAAGGAGAAAGGTGCACACAGATTCCGATGGGAGCGAGACCCGGTGGCATAAGACAGGGAAGACTAGGCCAGTCTATATCAGTGGCAAGCTGAAAGGTTACAAGAAAATTCTGGTGCTTTACACTAACTACAGAAAGCAGAGAAAGCCTGAGAAAACAAACTGGGTCATGCACCAGTACCACCTTGGCAACAATGAAGAAGAGAAGGAAGGGGAGTTGGTGGTCTCCAAAGTATTCTACCAAACACAGCCTAGACAATGTGGTGGTTCTGGTTCACTTATAAAAGACTCATTTCCTGCAAAAGTACTAAATGGTCACGATCAGGTAGCTAATCATAATCATAATAACAGTGGCTATGTTGAGTACTACAGTAATGCTTCTTCTTTCATATCCTTTGATCAAGGGGAACAGCAACATAGGTCTAACAATGCTCAAGTAATTTCGCATTTTGATGGTGCTCCTTTCATTAATCCTTGA 858 0.4382 MTAECSYPEDNDSIIVERRKDSLIRTCPTCGHHVKYQDQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHMLHPLIDEFIPTLEGENGICCTHPEKLPGVGKDGQIRHFFHRPSKAYTTGTRKRRKVHTDSDGSETRWHKTGKTRPVYISGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGGSGSLIKDSFPAKVLNGHDQVANHNHNNSGYVEYYSNASSFISFDQGEQQHRSNNAQVISHFDGAPFINP* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1268 285 MobiDBLite consensus disorder prediction 122 144 - -
Lja3g1268 285 MobiDBLite consensus disorder prediction 128 144 - -
Lja3g1268 285 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 3 283 - -
Lja3g1268 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 283 IPR044799 GO:0003700
Lja3g1268 285 SUPERFAMILY NAC domain 44 208 IPR036093 GO:0003677|GO:0006355
Lja3g1268 285 ProSiteProfiles NAC domain profile. 49 208 IPR003441 GO:0003677|GO:0006355
Lja3g1268 285 Pfam No apical meristem (NAM) protein 50 189 IPR003441 GO:0003677|GO:0006355
Lja3g1268 285 Gene3D NAC domain 58 212 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1268 Lja-Chr3 13323471 13326272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1268 25 272 NAC Transcription Factor Family AT4G28500 66.292 2.14e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g1268 NAM 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1268 - - gmx:100791648 477.633