Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1266 ATGCTTCTAAACATGGATGATGGAGAAATTTCAAATGCTTTCCCTCATCAAAACCCAGCCTCTTCATCTAATAATAACAATATTCCTCCTGCTTTGAAGAGGAAGAGAAACCTCCCTGGAAACCCAGATCCTGAAGCTGAAGTGATAGCCTTATCACCAAAGACTCTGATGGCCACCAACAGATTCGTGTGTGAGATTTGTCTAAAGGGTTTCCAAAGGGATCAGAATCTCCAACTGCACCGACGCGGCCATAACCTTCCATGGAAGCTCAAGCAGAGGACAAGCAAAGAAGTGAGGAAGAGAGTTTACGTGTGCCCGGAGAAGACGTGCGTCCACCATCACCCTTCAAGGGCTCTGGGGGACTTAACTGGGATCAAGAAGCACTTCTGCAGGAAGCACGGGGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGACTGGAAAGCACATTCGAAGACCTGTGGGACTAGAGAATACAAATGTGACTGTGGGACTGTATTTTCAAGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGTGATGCCTTAGCAGAGGAAACAGCCAAGGTAAACGCTACATCAAACTTAAACAACTCATTGGGAGGTAACATGGGTTACACCTTCATGCAACAAACTCCCCTTGGGCCTACCATGGCAACCCATTTTTCTTCAATTTTCAAGCCAATTTCATGCACTGAAGAAGAAACAGGTAACAACAATCATCAAACACCTAGAGGGCTATCCCTTTGGATGACTCAGCCTCAAACATCTCACCCTCATGAAACAATGTCGGCCAGTACCCATATGCATCATGAGATTCATAATCATCATCTTGGGACAACCACAAATCAAGGACCAATATACAGTGTTGGAAATGGAAATCCACCACCACCACCCTCTAATTATCAGCTAAATTGGGTGTTTGGGAATAAGTTTTCTTCCAATGGAAATCATCAAGAGCTAACTAGTACAACTTCACTTCCACTAGTGAATAACAACAACATTGTAAATGATGGTGCACACAACCTCATCAGTGTTCCTTCCTTGTATAGCTCCCAACAACAACACCAATCCCATCAAACAAGTGCATCAGCTAACATGTCTGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGAACAACTTCCTCAACTGATCCATCATTCCTTGGGAGCTTAGGATTGAGATCATGCAACAGTCCAAGGCAAGATCATGGGAACAGCAACAAATTCTGTGGAATGTACTCTTCCAGTTCAGTGGTCACCACAAGTCATGGCTGTGAGACAGAGAACTATTCAGATGATTTGTCGCAAATGCCCCCTGCGAAACGACGCCATGTGCAAAGCGAAGAGAGTGCTTGGGGACAAACTAGGGATTTTCTTGGTGTTGGAGTGGCGAACCATTTGCCGCCATTCATCAATCAACGGATGGATTTGATTTGA 1461 0.4504 MLLNMDDGEISNAFPHQNPASSSNNNNIPPALKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETAKVNATSNLNNSLGGNMGYTFMQQTPLGPTMATHFSSIFKPISCTEEETGNNNHQTPRGLSLWMTQPQTSHPHETMSASTHMHHEIHNHHLGTTTNQGPIYSVGNGNPPPPPSNYQLNWVFGNKFSSNGNHQELTSTTSLPLVNNNNIVNDGAHNLISVPSLYSSQQQHQSHQTSASANMSATALLQKAAQIGTTSSTDPSFLGSLGLRSCNSPRQDHGNSNKFCGMYSSSSVVTTSHGCETENYSDDLSQMPPAKRRHVQSEESAWGQTRDFLGVGVANHLPPFINQRMDLI* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1266 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Lja3g1266 486 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 485 - -
Lja3g1266 486 MobiDBLite consensus disorder prediction 1 46 - -
Lja3g1266 486 MobiDBLite consensus disorder prediction 14 31 - -
Lja3g1266 486 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lja3g1266 486 PANTHER F-BOX ASSOCIATED PROTEIN 6 485 - -
Lja3g1266 486 Gene3D Classic Zinc Finger 131 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1266 Lja-Chr3 13313528 13316845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1266 29 471 IDZ Gene Family AT1G03840 51.417 2.79e-138 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g1266 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1266 K25870 - gmx:100778666 670.233