Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1258 ATGGAAAGAAGAACAAACGGAACACATTTTGCGTGTGCTGCATGCAAGCATCAAAGGAAGAAATGCAATGAAAATTGCATATTGGCCCCTGTTTTTCCAGCAAGTAAAACTCGTGAATTCCACGCGGTACATAAGGTTTTCGGTGTCAGCAACGTAACAAAGCTAGTGAAAATTGCAAAGGATGAGGAAGATCGAAGAAGAGTGCTAGACTCATTAATATGGGAAGCAATGTGCAGGCAAAAAGACCCTATACTTGGCCCTTATGGAGAGTACATGAAAATTTACAATGAGTATAAGAAAGTGGGGGGCAAAGAATTGAATCATAAAGGAGAAGTAGTGGTTGATGATGAATTGGTTAATTATGTTAATGATAATAATGATTGTGTTATCGATTCAACTATGTATGGTGGCTATCATTCAAATTATTTACACGATTTTGAGAATATGATGAGGCCGGAAGTTGTGACTCCATTCCAACAGCATCCTCGTATGTACACATTTGTGTTGCAAACACGCTCTAACCGGACCGAGTATGGAATGTTACACATCAAATGTGAGAACAAACCATAG 570 0.3877 MERRTNGTHFACAACKHQRKKCNENCILAPVFPASKTREFHAVHKVFGVSNVTKLVKIAKDEEDRRRVLDSLIWEAMCRQKDPILGPYGEYMKIYNEYKKVGGKELNHKGEVVVDDELVNYVNDNNDCVIDSTMYGGYHSNYLHDFENMMRPEVVTPFQQHPRMYTFVLQTRSNRTEYGMLHIKCENKP* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1258 189 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Lja3g1258 189 Pfam Lateral organ boundaries (LOB) domain 11 101 IPR004883 -
Lja3g1258 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 5 127 - -
Lja3g1258 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1258 Lja-Chr3 13248753 13250201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1258 9 99 AS2 family AT1G06280 67.033 9.95e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja3g1258 LOB 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1258 - - vra:106780610 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1258 3 13248753 13250201 Lja3g1258 3 13248753 13250201 ECH