Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1255 ATGAGTAGTAATTTCAATGAGGATGATGATCGAGACTACAACCCATTTGTTAACTTCCATAACCGATTCTCATCAGACCACAACAACTTCAACAAGAGGATCTTGCTGGTTGCCATAGTTTCATTATCAGCGGTGTTAGCTCTGGTTCTGGCACTTCACCTCTACGCCAGGTTCGTTCTCCGTCGCCAAGCTCGCCGTAGAGCCGCCATTCACCAACTCACCCTCACCGTCGCCGCCCACAACACCACCCAATTCGCCAACGAAGGTCTCGACGCTACCCTCATCAACGCGCTTCCCACTTTCATCTTAAACAAATCGCAAGAAGATGAAAGTGAAGAATGCGCGGTGTGCTTGAGCGCTTTGGAACATGAAGAAAAGGTGAGGCTGCTTCCGAATTGCAAGCATACTTTCCACGTGAGTTGCATCGACACGTGGCTGACTTCCCACTCCACGTGTCCTGTTTGTCGAACCAAAGTCGAACCCACTAACACGGGACCCAAGCTCGAGCTGCAGCCGCGAGAGGGTCCCGTGTTGATAGGTCCGCATGATGCAACAGCACCCTCAGCTCCTGTTTTGTTTGAGCCAGGAGCTGAAGGCACGTCTGATAGTTCGCCTAAAATTCATGGTTCAAATCCTTCGAGGTTGAGCTCGTTCCGGAGAATGCTTAGTAGGGAGAGATCGTTAAGGAGAATCCAACCTTCTAGTTGTGATGATATTGTTGATCATGATTTAGAGAGGCAGTGA 744 0.4973 MSSNFNEDDDRDYNPFVNFHNRFSSDHNNFNKRILLVAIVSLSAVLALVLALHLYARFVLRRQARRRAAIHQLTLTVAAHNTTQFANEGLDATLINALPTFILNKSQEDESEECAVCLSALEHEEKVRLLPNCKHTFHVSCIDTWLTSHSTCPVCRTKVEPTNTGPKLELQPREGPVLIGPHDATAPSAPVLFEPGAEGTSDSSPKIHGSNPSRLSSFRRMLSRERSLRRIQPSSCDDIVDHDLERQ* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1255 247 MobiDBLite consensus disorder prediction 203 218 - -
Lja3g1255 247 SMART ring_2 114 155 IPR001841 -
Lja3g1255 247 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 29 247 - -
Lja3g1255 247 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lja3g1255 247 PANTHER RING FINGER DOMAIN-CONTAINING 29 247 - -
Lja3g1255 247 MobiDBLite consensus disorder prediction 219 247 - -
Lja3g1255 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 162 IPR013083 -
Lja3g1255 247 MobiDBLite consensus disorder prediction 185 247 - -
Lja3g1255 247 CDD RING-H2_PA-TM-RING 113 156 - -
Lja3g1255 247 Pfam Ring finger domain 113 156 IPR001841 -
Lja3g1255 247 SUPERFAMILY RING/U-box 94 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1255 Lja-Chr3 13229239 13230392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1255 1 247 C3H Transcription Factor Family AT2G42360 45.736 9.16e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1255 K19038 - gmx:100780265 229.565