Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1254 ATGAGAATGAAGAGCACTGGGGGAGAAATTATTCATGTTGAAGGAGGCCACATTGTTCGATCCACAGGTAGAAAAGATCGGCATAGCAAGGTTTACACTTCAAAAGGTCCTCGTGACCGCAGGGTTCGGCTATCAGCACACACCGCCATTCAATTCTACGACGTTCAAGACCGTCTCGGCTACGACCGACCGAGCAAGGCCGTCGACTGGCTCATCAAGAAGGCGAAGTCCGCCATTGACAAGCTTGCTGAGCTTCCTCCATGGCAACCACCTTCTAATCTTGAACAAGTCCAAGAGGCAGAGCAGAATGCAGGGTCAAGTGAGATGGGAATTGCAGAGCAATCTGAGTCCTCTGGCTACAATTTTCACCTCCAGAGACAACTAGCTGAGGACCCAGATAACCACCACCATAACCAGCAGCACAACCACCAGAACTCAGCATTCATTCCATCATCTATTGACAATGATGCCATAGCCTTCTTCCCCACAACCACTGCTGCTTCCTCCATAAACTTTCAGAGCTACCCTGCACAGGACCTTGGCCTTTCTCTTCACTCTTTCCAAGACCATGGTCTCATTCACGCACAATCTCAAACAGGTGGTGGGCAAACTTCCAGTGACCAAACCCTTTTCTCTGGCTCAACTCCCTCTGGGTTTGACACCAATTATCACAGGATTGTTACATGGAACAATGATTCAACCACCACTGACATGAACAGAGGTGGGTTCATGGTGAATTCACCAGCAATTCTAGGCCATGGTACTTCTGCTTATTCCCACAGGGGGACCCTTCAGTCCAGTTTTTCACCATCACTTCGTCCTTGGAATGAGATTCCAATGGCTTCCTCAGATAATCACAATCACAAGGCAATTCACCAGGCTTCAATCTTTGGCAGCAGGTTTCTCTCTGATGCAATACCTGGGTTCTGCATTCCAGCTAGGATTCAAGGAGAGGATGAGAGCCATGGAGTTTCTTCTGACAGGCCATCCTCTCCTTCACCTAACTCTCATCATCACTGA 1020 0.4863 MRMKSTGGEIIHVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELPPWQPPSNLEQVQEAEQNAGSSEMGIAEQSESSGYNFHLQRQLAEDPDNHHHNQQHNHQNSAFIPSSIDNDAIAFFPTTTAASSINFQSYPAQDLGLSLHSFQDHGLIHAQSQTGGGQTSSDQTLFSGSTPSGFDTNYHRIVTWNNDSTTTDMNRGGFMVNSPAILGHGTSAYSHRGTLQSSFSPSLRPWNEIPMASSDNHNHKAIHQASIFGSRFLSDAIPGFCIPARIQGEDESHGVSSDRPSSPSPNSHHH* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1254 339 MobiDBLite consensus disorder prediction 1 40 - -
Lja3g1254 339 MobiDBLite consensus disorder prediction 18 40 - -
Lja3g1254 339 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 338 IPR005333 GO:0003700
Lja3g1254 339 MobiDBLite consensus disorder prediction 91 118 - -
Lja3g1254 339 PANTHER TRANSCRIPTION FACTOR TCP4 3 338 - -
Lja3g1254 339 MobiDBLite consensus disorder prediction 84 118 - -
Lja3g1254 339 Pfam TCP family transcription factor 23 144 IPR017887 -
Lja3g1254 339 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Lja3g1254 339 MobiDBLite consensus disorder prediction 318 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1254 Lja-Chr3 13219880 13222609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1254 8 338 TCP Transcription Factor Family AT1G53230 42.857 1.20e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja3g1254 TCP 8.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1254 - - pvu:PHAVU_005G097200g 463.381