Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1243 ATGGAAATGGAAGCTTTTACCCATTTTCAAGTGAGCTCAGGGGTAATTGGAAGTGGGTATGCTTCATCTTCGTCTCTGGTTTTGGATAGGGACAAGGGAGAGCTCGTTGAGGCCCCTATGCAATTGGAACGAAAGGGTGTGTCCCCTGAGAGAAGTATTGAAGCTTTGAGGAACCATAGTGAAGCAGAGCGAAGGAGGAGAGCAAGAATTAATGCACATCTTGATACCCTTCGCACTGTGATTCCAGGTGCTAACAAGATGGACAAGGCCTCCTTGCTGGCTGAGGTAATTACACATTTGAAAGAGCTGAAAACAAATGCAGCACAAGCTAGTGAAGGCTTAATGATACCGAAGGACAATGATGAAATAAGAGTTGAAGAACAAGAAGGTGGATTGAATGGTTTCCCTTATTCAATTCGGGCATCGCTATGTTGCGAATATAAGCCTGGGTTATTGTCTGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAATGAGGGCAGAGATTGCAACCTTGGGAGGCAGGATGAAGAATGTCTTTGTGATAATTAGCTGCAAAGAACAGAACTTCGAAGATGCCGAGTACCGGCAGTTTCTAGCTGGCTCTGTACATCAAGCTCTTAGATCTGTGCTTGATAGATTTTCTGTTTCACAAGATATTTTAGAAAGCAGAAAGAGAAGGAGGATTTCTATATTCAGTTCTACATCTTTAGAAGATTTCTTGTGA 732 0.4235 MEMEAFTHFQVSSGVIGSGYASSSSLVLDRDKGELVEAPMQLERKGVSPERSIEALRNHSEAERRRRARINAHLDTLRTVIPGANKMDKASLLAEVITHLKELKTNAAQASEGLMIPKDNDEIRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIMRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVLDRFSVSQDILESRKRRRISIFSSTSLEDFL* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1243 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 106 IPR036638 GO:0046983
Lja3g1243 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 103 IPR011598 GO:0046983
Lja3g1243 243 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 243 - -
Lja3g1243 243 Gene3D - 50 112 IPR036638 GO:0046983
Lja3g1243 243 Pfam Helix-loop-helix DNA-binding domain 58 103 IPR011598 GO:0046983
Lja3g1243 243 SUPERFAMILY ACT-like 142 219 IPR045865 -
Lja3g1243 243 SMART finulus 60 109 IPR011598 GO:0046983
Lja3g1243 243 PANTHER TRANSCRIPTION FACTOR BHLH30 2 243 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1243 Lja-Chr3 13054716 13056519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1243 51 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.896 2.88e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g1243 HLH 5.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1243 - - lja:Lj3g3v2848980.1 456.447