Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1242 ATGATAAACCTCAAGTTCGTTCGTTTGTTGAGCAATGAGCAGCTACAACAAACAACACACTCCAATGGCGACCTCTCAGCTCACTGCATCAACGATTTCTGCCAAGAACTTGCCACATCCCTTGAAGGGTTTCGACCTTCAGCTCTTCAGTTGACACTTTCACTCAAAGCTGCTACTGTCTTCGCCCCCAAGCGCACTGCTATTAAGCCACTGGGTGATAGAGTACTGGTAAAAATTAAGGATGCCGAAGAGAAGACTGTCGGTGGGATTTTACTGCCTACGACTGCTCAAACAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTCGAGAAGGGAAGTCAGTTGGGAACAACAAAGTTGATATTAGTGTGAAGACAGGGGCTTGA 384 0.4714 MINLKFVRLLSNEQLQQTTHSNGDLSAHCINDFCQELATSLEGFRPSALQLTLSLKAATVFAPKRTAIKPLGDRVLVKIKDAEEKTVGGILLPTTAQTKPQGGEVVAVREGKSVGNNKVDISVKTGA* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1242 127 ProSitePatterns Chaperonins cpn10 signature. 68 92 IPR018369 GO:0005524|GO:0006457
Lja3g1242 127 PRINTS 10kDa chaperonin signature 90 111 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja3g1242 127 PRINTS 10kDa chaperonin signature 68 83 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja3g1242 127 PANTHER GROES CHAPERONIN 52 127 - -
Lja3g1242 127 CDD cpn10 68 126 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja3g1242 127 Pfam Chaperonin 10 Kd subunit 68 126 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja3g1242 127 Gene3D GroES chaperonin 63 127 IPR037124 GO:0006457
Lja3g1242 127 SUPERFAMILY GroES-like 67 126 IPR011032 -
Lja3g1242 127 PANTHER 10 KDA HEAT SHOCK PROTEIN 52 127 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja3g1242 127 SMART Cpn10_2 67 124 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1242 Lja-Chr3 13040696 13049843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1242 25 127 Calmodulin-binding Proteins AT5G20720 56.410 3.20e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1242 K04078 - gmx:100814751 126.331