LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g1239	ATGGCTTCTTCCAAGGATCGCGAGACCTTCGTCTACGTCGCCAAGCTTGCAGAGCAGGCTGAGCGATACGAAGAGATGGTGGATTCGATGAAGAAGGTTGCGAATTTGGATGTTGAACTGACTGTTGAAGAGAGGAATTTGCTTTCTGTGGGTTATAAGAATGTGATTGGTGCTCGCAGAGCGTCGTGGAGGATTCTGTCTTCCATTGAGCAGAAGGAAGAGACTAAAGGAAATGATGTAAATGCGAAGCGGATTAAGGAGTACAGGCAGAAGGTTGAGTCAGAGCTTGCGGACATCTGTAATGATGTTATGAGGGTGATTGATGAACACCTTATACCTTCAGCTACTGCTGGTGAATCGACTGTGTTTTACTATAAGATGAAAGGAGACTATTATCGTTATCTTGCAGAATTTAAGTCAGGCAATGAGAAGAAGGAGGCTGCTGATCAGTCAATGAAAGCATATGAGTCTGCTACCACTGCAGCAGAGGCTGAATTACCCCCCACTCATCCCATCCGTCTGGGCCTGGCTCTAAATTTCTCAGTTTTCTATTATGAGATCCTGAATTCACCTGAAAGAGCCTGTCATCTTGCAAAGCAAGCTTTTGATGAAGCTATTTCAGAGCTTGATACCTTGAATGAAGAGTCATACAAAGATAGCACCTTGATCATGCAACTTCTCAGGGACAACCTTACTCTATGGACTTCTGACATTCCAGAAGAGGGAGAAGATTCCCTGAAAGCGAATGACACTGCCAAGGTTGGCGGAGGAGAGGATGCGGAGTGA	786	0.4529	MASSKDRETFVYVAKLAEQAERYEEMVDSMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEETKGNDVNAKRIKEYRQKVESELADICNDVMRVIDEHLIPSATAGESTVFYYKMKGDYYRYLAEFKSGNEKKEAADQSMKAYESATTAAEAELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEEGEDSLKANDTAKVGGGEDAE*	262

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g1239	261	PANTHER	14-3-3 PROTEIN	3	254	IPR000308	-
	Lja3g1239	261	Coils	Coil	13	33	-	-
	Lja3g1239	261	Coils	Coil	195	215	-	-
	Lja3g1239	261	Gene3D	-	1	248	IPR036815	-
	Lja3g1239	261	SMART	1433_4	7	248	IPR023410	-
	Lja3g1239	261	PIRSF	14-3-3	1	247	IPR000308	-
	Lja3g1239	261	Pfam	14-3-3 protein	14	235	IPR023410	-
	Lja3g1239	261	MobiDBLite	consensus disorder prediction	238	261	-	-
	Lja3g1239	261	PRINTS	14-3-3 protein zeta signature	208	237	IPR000308	-
	Lja3g1239	261	PRINTS	14-3-3 protein zeta signature	154	180	IPR000308	-
	Lja3g1239	261	PRINTS	14-3-3 protein zeta signature	181	207	IPR000308	-
	Lja3g1239	261	PRINTS	14-3-3 protein zeta signature	88	112	IPR000308	-
	Lja3g1239	261	PRINTS	14-3-3 protein zeta signature	39	68	IPR000308	-
	Lja3g1239	261	PRINTS	14-3-3 protein zeta signature	119	141	IPR000308	-
	Lja3g1239	261	ProSitePatterns	14-3-3 proteins signature 2.	217	236	IPR023409	-
	Lja3g1239	261	ProSitePatterns	14-3-3 proteins signature 1.	45	55	IPR023409	-
	Lja3g1239	261	MobiDBLite	consensus disorder prediction	240	261	-	-
	Lja3g1239	261	SUPERFAMILY	14-3-3 protein	6	237	IPR036815	-
	Lja3g1239	261	PANTHER	BNAC03G57490D PROTEIN	3	254	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g1239	Lja-Chr3	13009752	13013049	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g1239	1	261	14-3-3 family	AT2G42590	82.510	3.37e-161	446

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g1239	K06630		-	gmx:547990	479.944