Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1237 ATGCTTGTAGTGTCACCTTTGAGGAGCAACAAAGATGAAAACCAAGAGGAGATGGAGAGCTTTTCCTTTGGAATCTCAAACGGCGGTTGTGGTGGTGGTGGTGACGAGTTTGGTGACTTTTCTGAGGGGAATTTGTTGGACAACATAAACTTTGACGACCTCTTCACTGGCATCAGCGTTGACAGAGATGCCTTGCCAGATTTGGAGGTGTACCCGGAGATGTTCGCCGAGTTCTCCCTCAGTGGCGGGGAGGATTCGGAGATGAACTCGTCGGTGGAAAACAGCAAAACTCATGATAATGACGACAAGAATTTAAAGAAATGTGATGAAGATAAAACAACTTCTTCGAGTTCAGCAGGTTGTGGGCGAGGGGAGGAGATAGTGAGCAAAAGGGATGAATCTATGGTGGTGAATCCATCACCAAAGGATGGTGATGGAAAAGGAAGAAAATCATCAGCTCAAACAAAGAATAATCTTCAAGGGAAGAGAAAAGTTAAGGTGGATTGGACACCAGAATTGCACAGGAGATTTGTGCAAGCTGTGGAACAGCTAGGAGTGGATAAGGCTGTGCCTTCAAGGATTCGGGAGATTATGGGAATCGATTGTCTCACTCGCCATAACATTGCCAGCCATCTTCAAAAATACAGATCCCATAGAAAACATTTGCTAGCACGTGAAGCTGAAGCAGCAAGTTGGAATCAAAGAAGACAAATGTATGGTGTAGCCGGAGGAGTGAAGAGAGAGGTGAGTCCTTGGTTGGCACCCACAATTGGTTTCCCTCCCATGACACCTCTTCCAATGCACCATTTCAGACCCTTACACGTATGGGGGCATCCATCTACGGACCAGTCCTTCATGAACATGTGGCCTAAACATCCACCACATTCACGGCCATCGCCACCACTGCCGCTCCCATGGGTACCGACGGCCACTTCCCCAGCACCCCAAGACCCTAAGTTTTGGCACGCTCAACACCAACAGACTCCAAACGCTCCAATCCCAGGAACAGCTTGCTTCCCACAACCTCTGACAGCAGCGAAATTTGGATGTCCGCCGGTTCCCGGAATCCCACCGCCGCTGCATGCCGTATACAAAACAGATGTCCGCCGCCACCGCCGCGTCCCTGCTCCTGCTGGACCCATCTTGAACTTACATCCGTCAAAGGAGAGCATAGATGCAGCAATTGGAGATGTTTTATCAAAACCATGGCTGCCGCTACCACTTGGACTCAAGGCTCCAGCGCTTGACAGTGTGATTGGTGAATTGCAGAGACAAGGAGTTTCCAACATTCCACCCTCTTGTGAAGGTCACTAA 1314 0.4924 MLVVSPLRSNKDENQEEMESFSFGISNGGCGGGGDEFGDFSEGNLLDNINFDDLFTGISVDRDALPDLEVYPEMFAEFSLSGGEDSEMNSSVENSKTHDNDDKNLKKCDEDKTTSSSSAGCGRGEEIVSKRDESMVVNPSPKDGDGKGRKSSAQTKNNLQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRIREIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQRRQMYGVAGGVKREVSPWLAPTIGFPPMTPLPMHHFRPLHVWGHPSTDQSFMNMWPKHPPHSRPSPPLPLPWVPTATSPAPQDPKFWHAQHQQTPNAPIPGTACFPQPLTAAKFGCPPVPGIPPPLHAVYKTDVRRHRRVPAPAGPILNLHPSKESIDAAIGDVLSKPWLPLPLGLKAPALDSVIGELQRQGVSNIPPSCEGH* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1237 437 MobiDBLite consensus disorder prediction 81 163 - -
Lja3g1237 437 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 434 IPR044825 GO:0003700|GO:0045893
Lja3g1237 437 SUPERFAMILY Homeodomain-like 162 221 IPR009057 -
Lja3g1237 437 MobiDBLite consensus disorder prediction 125 150 - -
Lja3g1237 437 Gene3D - 161 222 - -
Lja3g1237 437 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 434 - -
Lja3g1237 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 220 IPR017930 -
Lja3g1237 437 MobiDBLite consensus disorder prediction 91 113 - -
Lja3g1237 437 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 164 218 IPR006447 GO:0003677
Lja3g1237 437 Pfam Myb-like DNA-binding domain 167 216 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1237 Lja-Chr3 12982419 12986485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1237 38 296 G2-like Transcription Factor Family AT5G44190 48.289 7.61e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja3g1237 Myb_DNA-binding 3.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1237 - - jre:109001455 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1237 3 12982419 12986485 Lja3g1237 3 12982419 12986485 ECH
Lja3g1237 3 12982419 12986485 Lja3g1273 3 13411222 13415850 PCT