Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1228 ATGCGAAAGGCACCCTCATCGACCACCGTTACGAAGGCGAGAAACACCGCCGCCGCAACCACCGCCGCCGCAACTACCGCCGTGAGCGCCAAGAGCAAGATACACAAGCCTTCCAATAATGCAACCGAGGTTCATTTCAGAGGCGTTCGTAAGAGGCCATGGGGCCGTTACGCCGCCGAGATCAGAGATCCCGGCAAGAAGAGCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCTAGAGCCTACGACGCCGCCGCCCGCCAGTTCCGCGGCCCTAAAGCCAAAACCAACTTCCCCCAATCACCCTCCCCGGACAACAACACCGGACCCAACGACGTCGTCGTCGCTAACGTCAAGGCCAACCAGAGCCCAAGCCAGAGCAGCACCGTGGAATCCTCAACCCCGGAGCGTGACATCACGCGCGGCGGTGGTGTGGTCGTCGACCGCTTCCCCTTCCTCCCGCTGCATCCACAACAACTGATGCCTTTCTCCGGCGGCGGTGACGTTGTTTACACTGCTCCGGTCCGCCCGGTGATTTTTCTAGATCCGGCTTCTCAGGCCGAGTTTTTCGCCCAGCGGTTCCCTGTCCGATTCGAATCAGGACCGGTCGATTTTACCGGCATGTTTGGCGGTGGTATCCAGAGCGATTCCGATTCGTCCTCCGTCGTGGATTGCCGGCCAAAACCTACACTCAATCTCGATCTTAACCTTGCTCCGCCGAATGAAGCTTAA 741 0.6019 MRKAPSSTTVTKARNTAAATTAAATTAVSAKSKIHKPSNNATEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPQSPSPDNNTGPNDVVVANVKANQSPSQSSTVESSTPERDITRGGGVVVDRFPFLPLHPQQLMPFSGGGDVVYTAPVRPVIFLDPASQAEFFAQRFPVRFESGPVDFTGMFGGGIQSDSDSSSVVDCRPKPTLNLDLNLAPPNEA* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1228 246 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Lja3g1228 246 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Lja3g1228 246 MobiDBLite consensus disorder prediction 1 47 - -
Lja3g1228 246 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Lja3g1228 246 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Lja3g1228 246 MobiDBLite consensus disorder prediction 97 139 - -
Lja3g1228 246 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Lja3g1228 246 MobiDBLite consensus disorder prediction 96 145 - -
Lja3g1228 246 SUPERFAMILY DNA-binding domain 45 104 IPR016177 GO:0003677
Lja3g1228 246 PANTHER ERF FAMILY PROTEIN 34 231 - -
Lja3g1228 246 MobiDBLite consensus disorder prediction 1 39 - -
Lja3g1228 246 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 34 231 - -
Lja3g1228 246 CDD AP2 45 104 IPR001471 GO:0003700|GO:0006355
Lja3g1228 246 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1228 Lja-Chr3 12919513 12920795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1228 43 243 AP2-EREBP Transcription Factor Family AT5G44210 47.317 2.73e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g1228 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1228 K09286 - gmx:100801924 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1228 3 12919513 12920795 Lja3g3774 3 74422847 74424109 ECH
Lja3g1228 3 12919513 12920795 Lja3g4845 3 90486692 90487297 ECH
Lja3g1228 3 12919513 12920795 Lja3g1228 3 12919513 12920795 ECH
Lja3g1228 3 12919513 12920795 Lja6g3028 6 59067794 59069988 ECH