Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1227 ATGAGCAGTGGTGTTTGCTCAGAGCAGCTCCTCTCTCTCAAGAAATCTCTGAGAGATATTGACATCCCTCCGAGGAAGCTCCTCCCACGCCGTACCGGAGATTTTTCACCCGCCGGAGACATGTTTTCCGATGAGACCCTCCTTCAGAAGTACCTCCCCCACAACGGTCCGCCGGACTCCGACGACGACGACCCGTACTCCGACCACTTCCGCATGTTCGAGTTCAAGGTCCGGCGGTGCACCCGCAGCCGCAGCCACGACTGGACGGAGTGCCCGTTTGCCCACCCTGGTGAAAAGGCCCGCCGCCGTGACCCCCGCCGGTTCCACTACTCCGGTGCTGTCTGCCCCGAGTACCGCCGCGCCGGTGCATGCAGCCGCGGCGACGCCTGCGAATTCTCCCACGGCGTTTTTGAGTGCTGGCTGCACCCGGCGAGGTACAGAACAGAGGCTTGCAAAGATGGCAGGAACTGCAAGCGGAAGGTTTGCTTCTTTGCACATTCACCTCGCCAACTCAGGGTTCTTCCCTCTGATCTCAACAACAACGACATGGGTTTTCACCAAAAATCTAGTACCAAGTTGTTGAACAAGTGTTGTTCCTTTTGCCATTGCTCCTCTGTTTCTTGTTCACCAACTTCAACTCTGTTTGGTGTGTCCCATTTTTCTTCTTCTCCACCAATGTCACCCTCTTCTTCTCCTTCTCCTTCACCTTCACGTTCCCTCTCAAGGTTTGTGGATTTCAACCATCAAATGAGCTGCAAGGAGCTACTGTGCTCCTTGGAGGGTCTGAATTTTGGGGACTCTGTTTCTTCTTCCCCTGTTTCTGCTTCTAAGCTGAATTGGCTAGATGTTTCACCAGGCAATAGTTCTGGAAGGTTTTCCAGTGGGAAGAAGTATTCAATGGGGGAAGAGAACAAGGTTGGTGGTGGTGGTGGTGGTGTTAATTGTGATGAGGTCACATCAGCCCCTGATTTTGGGTGGGTGAATGACTTGCTGATGTAA 999 0.5355 MSSGVCSEQLLSLKKSLRDIDIPPRKLLPRRTGDFSPAGDMFSDETLLQKYLPHNGPPDSDDDDPYSDHFRMFEFKVRRCTRSRSHDWTECPFAHPGEKARRRDPRRFHYSGAVCPEYRRAGACSRGDACEFSHGVFECWLHPARYRTEACKDGRNCKRKVCFFAHSPRQLRVLPSDLNNNDMGFHQKSSTKLLNKCCSFCHCSSVSCSPTSTLFGVSHFSSSPPMSPSSSPSPSPSRSLSRFVDFNHQMSCKELLCSLEGLNFGDSVSSSPVSASKLNWLDVSPGNSSGRFSSGKKYSMGEENKVGGGGGGVNCDEVTSAPDFGWVNDLLM* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1227 332 SMART c3hfinal6 145 168 IPR000571 GO:0046872
Lja3g1227 332 SMART c3hfinal6 109 136 IPR000571 GO:0046872
Lja3g1227 332 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872
Lja3g1227 332 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 113 135 IPR000571 GO:0046872
Lja3g1227 332 PANTHER UNKEMPT FAMILY MEMBER 19 331 IPR045234 -
Lja3g1227 332 SUPERFAMILY CCCH zinc finger 108 139 IPR036855 GO:0046872
Lja3g1227 332 Gene3D - 106 177 - -
Lja3g1227 332 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 19 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1227 Lja-Chr3 12891689 12893199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1227 58 172 C2H2 Transcription Factor Family AT5G07500 66.087 7.77e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja3g1227 zf-CCCH 8.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1227 K23047 - lja:Lj0g3v0293759.1 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1227 3 12891689 12893199 Lja3g1227 3 12891689 12893199 ECH