Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1226 ATGACTGGCAAAGAAATCCTCCAAAAGATGAAGGTGAAAGTTGGGCTTGGAACATCAGTACCAGAAACAGGGAAAGGAAAAGGCAAAACATCAAAACATATTACACATGGCTTTCACTTGATGAAAGGAAAATCAGCCCATCCTATGGAAGATTATTTAGTTTCAGAATTTAAAAAAGACAAGGACAAAGAATTGGGTTTGTTTGCTATATTTGATGGCCACTTAGGCCATGATGTTGCAAGCTATTTGCAGAACCACCTTTTCCAAAACATCTTGAAACAGAATGACTTCTGGACTGAAACAGAAATCGCAGTGAAGAGAGCTTATCTTGAAACAGATGAGAAAATACTAGAACAATCACTTGTCTTGGGAAGAGGAGGATCAACAGCAGTAACTGCAATACTGATTGATGGCCAGAAGCTTGTAATAGCAAATGTTGGTGACTCTCGAGCTGTTGTTTGTGAGAATGGAAAGGCAAGGCAACTATCTATTGATCATGAGCCAAGCAAGGAGAAAAAATATATTGAAAGACGTGGTGGTTTTGTCTCAAATCTCCCAGGAGATGTGCCTCGTGTAGATGGACAGCTGGCAGTAGCAAGGGCTTTTGGTGACAAGAGCTTGAAGATGCATCTTAGTTCAGAACCTGATGTGGTTGTACAGGATGTAGATCAGCATATAGAGTTTCTCATTCTGGCTAGTGATGGAATATGGAAGGTTATGTCAAACCAAGAAGCAGTGGATTCTATTAGACAAATAAAGGATGCTCAGGCTGCAGCTGAACGCTTGATTGAAGAGGCTGTTTCCAAGAAGAGTAAGGATGACATATCCTGCATAGTTGTGAAGTTCCAATGA 852 0.4049 MTGKEILQKMKVKVGLGTSVPETGKGKGKTSKHITHGFHLMKGKSAHPMEDYLVSEFKKDKDKELGLFAIFDGHLGHDVASYLQNHLFQNILKQNDFWTETEIAVKRAYLETDEKILEQSLVLGRGGSTAVTAILIDGQKLVIANVGDSRAVVCENGKARQLSIDHEPSKEKKYIERRGGFVSNLPGDVPRVDGQLAVARAFGDKSLKMHLSSEPDVVVQDVDQHIEFLILASDGIWKVMSNQEAVDSIRQIKDAQAAAERLIEEAVSKKSKDDISCIVVKFQ* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1226 283 SMART PP2C_SIG_2 40 282 IPR001932 -
Lja3g1226 283 SMART PP2C_4 24 280 IPR001932 -
Lja3g1226 283 CDD PP2Cc 36 282 IPR001932 -
Lja3g1226 283 Pfam Protein phosphatase 2C 46 275 IPR001932 -
Lja3g1226 283 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 1 283 - -
Lja3g1226 283 PANTHER PROTEIN PHOSPHATASE 2C 1 283 IPR015655 GO:0004722|GO:0006470
Lja3g1226 283 Coils Coil 245 272 - -
Lja3g1226 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Lja3g1226 283 SUPERFAMILY PP2C-like 32 282 IPR036457 -
Lja3g1226 283 Gene3D - 17 283 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1226 Lja-Chr3 12883829 12888213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1226 24 283 PP2C-type Phosphatase Gene Family AT4G28400 75.000 7.20e-146 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1226 K17506 - gmx:100819846 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1226 3 12883829 12888213 Lja3g1226 3 12883829 12888213 ECH