Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1224 ATGCTTAGGATTCTTGTTGTTCTCTCGCTGCTCTCACCACCACCACCACCACCACCATCAATGCCTGCTCAGAAGCGTTCCTTCCCTGACTCTCCTCACGATCACGATCACCATCGCCATGCCAACCAATCCAACCACGAACATGAAGAAGATGATTATGACAAATCAGATGGTTCTGACCATGCCCCATCTCCAGAAGAAAAATCCGAATATCTGTTGGTACGACTTCAGGAAATTCGTAAAGATGTTCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCATGCACCGGTTTTGCAGGGAATGCATTGACAAGTCGATGAGACTAGGGAACAATGAATGCCCTGCTTGTCGAACACACTGTGCCAGTCGCCGCTCTTTGAGAGATGATCCAAACTTTGATGCCCTAATTGCAGCTTTATATCCAGATATTAAGAAGTACGAGGAAGAGGAGCTTGAATTCGGGGAAGAGGATAAGAACCGCAATAAACTGATTCAAGCTTCCATTGCAAAAGTTGTTCAGCGGCAGTCTGAAGCACTGGTTAAGAGACGTAGAGATACACCTGGTGCATTTATGACAAGATCACAGCGCAATCAACGGAATGTTATTTCCAGGAGACAGAACCCAGAGGTGGATACTCAAGGATCTGAAGATAATGAGGAGGAAAATGGCAATAATGAAAAGGACTCATCTGCAGATGAGCGATGTACGGAACCCAGACAGAGGAGGAAGAAGAGGCGGTCCAGAGGTCGGCCTTCTCAACCCTCATCATCGACAGCAAGTCCTGATGGTGGGTGCATAGAAAGTGAAATCGGTATAAGTAGAGAAAATCAAGGAGTTTCTTCAAGGCAGGCGTCAAAACCTCAAAAGCTGACTTGGGGAAGGGGTGGTTTCAGGAGTAACACACGACATGGCAATGGCAATGGTAGCAATAGCAAAAGTTCCCGCCGTGGCCGCTTGGCCAAATTGGTTGATTATCTCTGTAACTTAGATGAAAACACTGATGAGTTCGATATTCATCTCATGCTTTTTCCTTTGGACAGACAAAGTACACCAAGTTTGCAGCAGCCACACCTTGTCTGTCGGCCAACATTGTCCGTGAGGCACCTTTGTGAATATGTTGCTTGTCAGACACCTTTGCCAGTTGAAGAAGTTGAGATTTTGGCAGTTAAGAGATGCTGCAGTACATTTTGTGATAAGTCAGTTGATGAGGCTTCGTCCTTTGATGAGCTTACACCACTGGTTATTGATCCTAGCAAAGATGAACTGGAAACTTTGCAAGGGCATGAACCTTTGACAGGGATTAAATCCAATTGCATATCTCAAAGGGGGCATTTGATGCTGGCATATAGGCGGAAGGAGTGA 1386 0.4524 MLRILVVLSLLSPPPPPPPSMPAQKRSFPDSPHDHDHHRHANQSNHEHEEDDYDKSDGSDHAPSPEEKSEYLLVRLQEIRKDVQCPICLGIIKKTRTVMECMHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNFDALIAALYPDIKKYEEEELEFGEEDKNRNKLIQASIAKVVQRQSEALVKRRRDTPGAFMTRSQRNQRNVISRRQNPEVDTQGSEDNEEENGNNEKDSSADERCTEPRQRRKKRRSRGRPSQPSSSTASPDGGCIESEIGISRENQGVSSRQASKPQKLTWGRGGFRSNTRHGNGNGSNSKSSRRGRLAKLVDYLCNLDENTDEFDIHLMLFPLDRQSTPSLQQPHLVCRPTLSVRHLCEYVACQTPLPVEEVEILAVKRCCSTFCDKSVDEASSFDELTPLVIDPSKDELETLQGHEPLTGIKSNCISQRGHLMLAYRRKE* 462
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1224 461 MobiDBLite consensus disorder prediction 10 25 - -
Lja3g1224 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 155 IPR013083 -
Lja3g1224 461 SMART ring_2 85 124 IPR001841 -
Lja3g1224 461 MobiDBLite consensus disorder prediction 28 66 - -
Lja3g1224 461 MobiDBLite consensus disorder prediction 198 217 - -
Lja3g1224 461 ProSitePatterns Zinc finger RING-type signature. 101 110 IPR017907 -
Lja3g1224 461 MobiDBLite consensus disorder prediction 232 247 - -
Lja3g1224 461 ProSiteProfiles Zinc finger RING-type profile. 85 125 IPR001841 -
Lja3g1224 461 MobiDBLite consensus disorder prediction 182 323 - -
Lja3g1224 461 MobiDBLite consensus disorder prediction 281 323 - -
Lja3g1224 461 Pfam Zinc finger, C3HC4 type (RING finger) 84 124 - -
Lja3g1224 461 PANTHER OS11G0578200 PROTEIN 34 461 IPR044592 -
Lja3g1224 461 MobiDBLite consensus disorder prediction 10 66 - -
Lja3g1224 461 CDD RING-HC_RING1_like 85 125 - -
Lja3g1224 461 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 34 461 - -
Lja3g1224 461 SUPERFAMILY RING/U-box 72 156 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja3g1224 Lja-Chr3 12860135 12867595 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1224 77 148 C3H Transcription Factor Family AT3G23060 33.333 1.55e-06 48.5
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1224 3 12860135 12867595 Lja3g1224 3 12860135 12867595 ECH