Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja3g1224 | ATGCTTAGGATTCTTGTTGTTCTCTCGCTGCTCTCACCACCACCACCACCACCACCATCAATGCCTGCTCAGAAGCGTTCCTTCCCTGACTCTCCTCACGATCACGATCACCATCGCCATGCCAACCAATCCAACCACGAACATGAAGAAGATGATTATGACAAATCAGATGGTTCTGACCATGCCCCATCTCCAGAAGAAAAATCCGAATATCTGTTGGTACGACTTCAGGAAATTCGTAAAGATGTTCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCATGCACCGGTTTTGCAGGGAATGCATTGACAAGTCGATGAGACTAGGGAACAATGAATGCCCTGCTTGTCGAACACACTGTGCCAGTCGCCGCTCTTTGAGAGATGATCCAAACTTTGATGCCCTAATTGCAGCTTTATATCCAGATATTAAGAAGTACGAGGAAGAGGAGCTTGAATTCGGGGAAGAGGATAAGAACCGCAATAAACTGATTCAAGCTTCCATTGCAAAAGTTGTTCAGCGGCAGTCTGAAGCACTGGTTAAGAGACGTAGAGATACACCTGGTGCATTTATGACAAGATCACAGCGCAATCAACGGAATGTTATTTCCAGGAGACAGAACCCAGAGGTGGATACTCAAGGATCTGAAGATAATGAGGAGGAAAATGGCAATAATGAAAAGGACTCATCTGCAGATGAGCGATGTACGGAACCCAGACAGAGGAGGAAGAAGAGGCGGTCCAGAGGTCGGCCTTCTCAACCCTCATCATCGACAGCAAGTCCTGATGGTGGGTGCATAGAAAGTGAAATCGGTATAAGTAGAGAAAATCAAGGAGTTTCTTCAAGGCAGGCGTCAAAACCTCAAAAGCTGACTTGGGGAAGGGGTGGTTTCAGGAGTAACACACGACATGGCAATGGCAATGGTAGCAATAGCAAAAGTTCCCGCCGTGGCCGCTTGGCCAAATTGGTTGATTATCTCTGTAACTTAGATGAAAACACTGATGAGTTCGATATTCATCTCATGCTTTTTCCTTTGGACAGACAAAGTACACCAAGTTTGCAGCAGCCACACCTTGTCTGTCGGCCAACATTGTCCGTGAGGCACCTTTGTGAATATGTTGCTTGTCAGACACCTTTGCCAGTTGAAGAAGTTGAGATTTTGGCAGTTAAGAGATGCTGCAGTACATTTTGTGATAAGTCAGTTGATGAGGCTTCGTCCTTTGATGAGCTTACACCACTGGTTATTGATCCTAGCAAAGATGAACTGGAAACTTTGCAAGGGCATGAACCTTTGACAGGGATTAAATCCAATTGCATATCTCAAAGGGGGCATTTGATGCTGGCATATAGGCGGAAGGAGTGA | 1386 | 0.4524 | MLRILVVLSLLSPPPPPPPSMPAQKRSFPDSPHDHDHHRHANQSNHEHEEDDYDKSDGSDHAPSPEEKSEYLLVRLQEIRKDVQCPICLGIIKKTRTVMECMHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNFDALIAALYPDIKKYEEEELEFGEEDKNRNKLIQASIAKVVQRQSEALVKRRRDTPGAFMTRSQRNQRNVISRRQNPEVDTQGSEDNEEENGNNEKDSSADERCTEPRQRRKKRRSRGRPSQPSSSTASPDGGCIESEIGISRENQGVSSRQASKPQKLTWGRGGFRSNTRHGNGNGSNSKSSRRGRLAKLVDYLCNLDENTDEFDIHLMLFPLDRQSTPSLQQPHLVCRPTLSVRHLCEYVACQTPLPVEEVEILAVKRCCSTFCDKSVDEASSFDELTPLVIDPSKDELETLQGHEPLTGIKSNCISQRGHLMLAYRRKE* | 462 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja3g1224 | 461 | MobiDBLite | consensus disorder prediction | 10 | 25 | - | - | |
Lja3g1224 | 461 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 155 | IPR013083 | - | |
Lja3g1224 | 461 | SMART | ring_2 | 85 | 124 | IPR001841 | - | |
Lja3g1224 | 461 | MobiDBLite | consensus disorder prediction | 28 | 66 | - | - | |
Lja3g1224 | 461 | MobiDBLite | consensus disorder prediction | 198 | 217 | - | - | |
Lja3g1224 | 461 | ProSitePatterns | Zinc finger RING-type signature. | 101 | 110 | IPR017907 | - | |
Lja3g1224 | 461 | MobiDBLite | consensus disorder prediction | 232 | 247 | - | - | |
Lja3g1224 | 461 | ProSiteProfiles | Zinc finger RING-type profile. | 85 | 125 | IPR001841 | - | |
Lja3g1224 | 461 | MobiDBLite | consensus disorder prediction | 182 | 323 | - | - | |
Lja3g1224 | 461 | MobiDBLite | consensus disorder prediction | 281 | 323 | - | - | |
Lja3g1224 | 461 | Pfam | Zinc finger, C3HC4 type (RING finger) | 84 | 124 | - | - | |
Lja3g1224 | 461 | PANTHER | OS11G0578200 PROTEIN | 34 | 461 | IPR044592 | - | |
Lja3g1224 | 461 | MobiDBLite | consensus disorder prediction | 10 | 66 | - | - | |
Lja3g1224 | 461 | CDD | RING-HC_RING1_like | 85 | 125 | - | - | |
Lja3g1224 | 461 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED | 34 | 461 | - | - | |
Lja3g1224 | 461 | SUPERFAMILY | RING/U-box | 72 | 156 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja3g1224 | Lja-Chr3 | 12860135 | 12867595 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja3g1224 | 77 | 148 | C3H Transcription Factor Family | AT3G23060 | 33.333 | 1.55e-06 | 48.5 |