Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1223 ATGGCGAGGCTCCCCTACTCTCATCGTTCCAGAACCGCCATGGACGCTCATCACGATCCTCTCTTATCTTCCCTCTGGGCCATTCGGAAAGCCCTAGAAGCTTCCAACAATTCATGCCCGAATCTCAGTAACTTACTCCGAGACTGCATCAGAAACTTCAAGAACACTGACCGGTACCGAAACGATGTCAGATTTCTCAAGATCTGGCTCCTCTACATGGGAGTCAGTTCTGATTTTGATAGTGTATTTAAGGAAATGCTGGATAGCAATGTGTGTGTCAACAATGCTTCACTTTATGTGTGGTCTGCGTGTTTTTTTGAATTCAAGGGAAGATTGCGCGATGCCCTCACGATTTATCAGCTTGGTGTTTTCAGGAATGCAGAGCCAACTGATTGGTTAAAGAAGGCGCATAAATTATTTCTCAACCGGATTTCTGAAATTCGGAATGCTGCTTCAAGCCAGAAGGTTGAGTCTAAAGAATCTGCGAAATTGGAAAACAGTGGCATTGATCCATGGGATACCTCCACCATGGACAGTCTGTTGAAGAAGATAAATCCTTTAATTAAGAAATTTGACGGATATCATTCTAGCACTAAATCTTACCTCGGAAAAGTTGCCTTGTCTGCTTTGAAGAATACCTCAAGGAATAAAGTTATAGAAATAGGTGGAAAGAAGTACCATATCAAGGGCTGTGCTGGACAGGGTGGTTTTGCTCAAGTATACAAGGCATATGTCAACACTGATCCCGATGTCCTTGTTGCACTAAAGATACAAAGGCCAGCTTTCTCCTGGGAATTTTACATGTACCGGCAGCTTGATCAGCGCATCTCAGGCGGACAAAGGTCAAGCTATGGATTCGCCCAGAGAGTTCATCTTTATTCTGACTTTAGCATACTCGTCTGTGACTATCTACCTCATGGGACTCTACAGGATGTCATAAACTCATATGTGGTCATGCGAAAATCCATGGAAGAAGTGTTATGCATTTATTACACAATAGAAATGTTACACATGGTTGAAACTTTGCATGATGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTTATTCGCTATGCTAGGGGTGACCTTACAGAAGATGGGTTCTTGGACCGCAGTGGTTCTTGGCTAGATCAGGGCCTTTGCCTCGTTGACTGGGGAAGAGGGATTGATCTGCATCTCTTTCCAGATCACACGGTATTTATGGGAGATTGCAAAACTTCTGGTTTTCGCTGCATTGAGATGCAAGAGAATAAGCCATGGAAATTTCAGGTAGATGCATATGGTCTTTGTGCTGTTGTCCATGTGATGTTGCATAATTCCTATATGGAAATCGTCAAAAAAGAGTCATCCGATGGGAGCTACGAGTATCATCCCAAACTACCCTTTAAACGTTACTGGAACGTTGAGCTGTGGAAGACTTTCTTCACTAAGATGCTAAATAAATACCCCGGCGATGATGATAGAAGGTTGCTGCAAGATTTGAAAAAGTCCTTCCAGGATTATATGGGCTCCAACCCCCAGCTTATAAAGAAATTAAAGGAGTTACTCGCGAAGCAAAGAGCTTCATTGTGTTCTGCATAG 1590 0.4302 MARLPYSHRSRTAMDAHHDPLLSSLWAIRKALEASNNSCPNLSNLLRDCIRNFKNTDRYRNDVRFLKIWLLYMGVSSDFDSVFKEMLDSNVCVNNASLYVWSACFFEFKGRLRDALTIYQLGVFRNAEPTDWLKKAHKLFLNRISEIRNAASSQKVESKESAKLENSGIDPWDTSTMDSLLKKINPLIKKFDGYHSSTKSYLGKVALSALKNTSRNKVIEIGGKKYHIKGCAGQGGFAQVYKAYVNTDPDVLVALKIQRPAFSWEFYMYRQLDQRISGGQRSSYGFAQRVHLYSDFSILVCDYLPHGTLQDVINSYVVMRKSMEEVLCIYYTIEMLHMVETLHDVGLIHGDFKPDNLLIRYARGDLTEDGFLDRSGSWLDQGLCLVDWGRGIDLHLFPDHTVFMGDCKTSGFRCIEMQENKPWKFQVDAYGLCAVVHVMLHNSYMEIVKKESSDGSYEYHPKLPFKRYWNVELWKTFFTKMLNKYPGDDDRRLLQDLKKSFQDYMGSNPQLIKKLKELLAKQRASLCSA* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1223 529 SUPERFAMILY Protein kinase-like (PK-like) 223 502 IPR011009 -
Lja3g1223 529 Gene3D - 7 162 - -
Lja3g1223 529 ProSiteProfiles BUB1 N-terminal domain profile. 4 161 IPR013212 -
Lja3g1223 529 ProSiteProfiles Protein kinase domain profile. 226 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1223 529 SMART serkin_6 226 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1223 529 Gene3D Transferase(Phosphotransferase) domain 1 223 526 - -
Lja3g1223 529 PANTHER BUB1 KINASE, ISOFORM A-RELATED 15 156 - -
Lja3g1223 529 PANTHER BUB1 KINASE, ISOFORM A-RELATED 147 528 - -
Lja3g1223 529 Pfam Mad3/BUB1 homology region 1 13 123 IPR013212 -
Lja3g1223 529 SMART mad3_bub1_i 1 123 IPR013212 -
Lja3g1223 529 Pfam Protein kinase domain 227 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1223 529 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 15 156 IPR015661 GO:0007094
Lja3g1223 529 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 147 528 IPR015661 GO:0007094
Lja3g1223 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 347 359 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1223 Lja-Chr3 12853390 12858270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1223 208 440 Receptor kinase-like Gene Family AT5G58300 22.000 7.04e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Lja3g1223 Pkinase 5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1223 K02178 - gmx:100783171 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1223 3 12853390 12858270 Lja3g1223 3 12853390 12858270 ECH