Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1222 ATGGCGGATGGACAGCAGCATCCATCGGTTGTTCAGAAGCTAGCTGGACGGTCTTATCTCGCGTCCAGGCTTAGCCCCAACGTCCACTCGAGGAATTGTTCTGCTTTGTCTGGTAGTTACTTCAATGGAGGAGCGCACACTTCTGGTTTGGCGATGGTGTCCCCCGTGCCTGCTATTACTGTGCCCGCACCATCGGAGAAGGGGGCAGCTGGATTTTTGGCGGATTTTCTGATGGGAGGAGTGTCTGCTGCTGTCTCCAAGACAGCTGCTGCTCCAATTGAACGTGTGAAATTGCTTATCCAAAATCAGGATGAGATGATCAAAAGTGGTCGGCTATCGGAGCCTTATAAGGGAATCTCGGATTGTTTTGGTCGTACCATGAAGGATGAGGGAGTCATTGCTCTGTGGAGAGGCAATACTGCTAATGTTATCAGATACTTTCCTACACAGGCTCTGAACTTTGCTTTTAAGGATTACTTCAAAAGGCTTTTCAACTTTAAAAAGGATAAAGATGGCTACTGGAAATGGTTTGCTGGGAATTTGGCTTCTGGTGGGGCTGCTGGGGCTTCCTCCCTATTATTTGTTTATTCCTTGGATTATGCCCGTACTCGTTTGGCAAATGACGCAAAGGCTGCCAAGAAAGGTGGTGAGAGGCAGTTTAATGGTTTGATTGATGTCTACAAGAAAACCATTAAGTCTGATGGCATTGCTGGCCTTTATCGTGGATTCAATATCTCATGTGTTGGAATCATAGTGTATCGTGGTCTTTACTTTGGAATGTATGATTCTCTGAAACCAGTTGTTTTGGTTGGTACAATGCAGGAAAGTTTCTTTGCTAGTTTCCTTTTGGGATGGGGAATCACTATTGGTGCTGGTTTGGCTTCTTATCCCATTGACACTGTCCGTAGAAGGATGATGATGACTTCTGGAGAAGCTGTGAAGTACAAGAGCTCTTTGCATGCATTCCAAACAATAGTTGCAAAGGAGGGTACTAAGTCACTCTTCAAAGGTGCTGGTGCAAACATATTACGTGCTGTTGCTGGTGCTGGTGTGCTTGCCGGGTATGACAAGCTGCAGCTCATCATGTTTGGAAAGAAGTACGGTTCTGGCGGCGGCTAA 1119 0.4629 MADGQQHPSVVQKLAGRSYLASRLSPNVHSRNCSALSGSYFNGGAHTSGLAMVSPVPAITVPAPSEKGAAGFLADFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGISDCFGRTMKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTIKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGTMQESFFASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQTIVAKEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLIMFGKKYGSGGG* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1222 372 PRINTS Mitochondrial carrier protein signature 88 102 IPR002067 GO:0055085
Lja3g1222 372 PRINTS Mitochondrial carrier protein signature 240 258 IPR002067 GO:0055085
Lja3g1222 372 PRINTS Mitochondrial carrier protein signature 138 158 IPR002067 GO:0055085
Lja3g1222 372 PRINTS Mitochondrial carrier protein signature 75 88 IPR002067 GO:0055085
Lja3g1222 372 PRINTS Mitochondrial carrier protein signature 284 306 IPR002067 GO:0055085
Lja3g1222 372 PRINTS Mitochondrial carrier protein signature 190 208 IPR002067 GO:0055085
Lja3g1222 372 PRINTS Adenine nucleotide translocator signature 280 296 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja3g1222 372 PRINTS Adenine nucleotide translocator signature 72 84 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja3g1222 372 PRINTS Adenine nucleotide translocator signature 175 188 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja3g1222 372 PRINTS Adenine nucleotide translocator signature 149 161 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja3g1222 372 PRINTS Adenine nucleotide translocator signature 116 137 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja3g1222 372 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 3 372 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja3g1222 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 70 163 IPR018108 -
Lja3g1222 372 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-RELATED 3 372 - -
Lja3g1222 372 Gene3D Mitochondrial carrier domain 73 368 IPR023395 -
Lja3g1222 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 275 361 IPR018108 -
Lja3g1222 372 SUPERFAMILY Mitochondrial carrier 71 357 IPR023395 -
Lja3g1222 372 Pfam Mitochondrial carrier protein 275 362 IPR018108 -
Lja3g1222 372 Pfam Mitochondrial carrier protein 71 167 IPR018108 -
Lja3g1222 372 Pfam Mitochondrial carrier protein 174 267 IPR018108 -
Lja3g1222 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 175 267 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1222 Lja-Chr3 12848228 12851595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1222 3 363 Antiporters AT4G28390 81.351 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1222 K05863 - gmx:100818408 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1222 3 12848228 12851595 Lja3g1222 3 12848228 12851595 ECH