Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1221 ATGTCATCAGCTTCATCTTCTTATTCCTTCACCACTTGTGTGCTATTCCTCTTTGTTCTTCTTATGTCTTGTTTCATGAACAACCTTAGTGCAAAGCACCAGCACCTGCATAAGCACCAGATCAGGCCCAAGCACACCCATAACCCTCCATTAAACCCGAGGCTCTACCGTGCTTTTCTTGCCCTCCAAGCATGGAAGCATGTGATCTACTCAGACCCAAAGAACCACACTGCTAATTGGGTAGGTCCTTCAGTTTGCAACTACACTGGTATCTACTGTGCTCCATCTGTTGATGACCCTAAAGTAACAGTTGTGGCTGGCATTGACCTTAACTTTGGAGACATTGCAGGGTTCCTACCTTATGAAATAGGCCTGCTCTCTGACCTTGCACTCCTTCACCTCAATAGCAATCGCTTCTGCGGCATTGTTCCAGAGACCTTGAGCAACCTTACTCTACTCTATGAGCTTGATCTTAGCAACAACAGATTTGTTGGACCCTTTCCTTCAGTTGTGCTTCGCCTTCCTTCCCTAAAATTTCTTGACATCCGCTACAATGAATTTGAAGGGCCATTGCCTCCTCAGCTTTTCAACAAATCTTTTGATGCTGTCTTTGTTAATAACAACCGCTTCACCAGTTCTATTCCGCGAAATTTAGGCCAAAGCAAAGCTTCTGTTTTGGTCTTTGCTAACAACAAATTTGGAGGCTGCCTGCCAGAGAGCATAGTAAACTTCGCTGATACTTTGGAGGAACTTGTCCTCATCAATACCAGCATATCAGGTTGTCTACCACAGCAAGTTGGATTTCTCTACAAACTGAGAGTGTTTGATGTGAGTTTCAACAACATTGTTGGCCCCATACCTTACAGCCTTGCAGGGTTATCTCATTTGGAACAGCTAAATTTGGGCCACAACATGATGAGTGGCATAGTCCCTATGGGAGTTTGTGACTTGCCAGACTTGGCTAACTTCACCTTTTCTTATAACTTCTTCTGTGAGGAAGAGGGTATTTGTCAGAATTTGACATCAAAACGGATAGTGTTTGATGATCGCCGGAACTGTTTGCCAGAGAAGCCTCTACAGAGGAGCGAAAAGGAATGCAGTGCCCAACTTGAACACCCAGTTGATTGCTTTGAGCTTTGTTGTCCTGTTGGGGGTTCTGGGAACAATGTCACTGCTGGTTCAGTGGCTATTCCACCTGCTGCAGTTCCAGCTGCAATGCCTGTTTCTGCACCTGTTCTTGCACCAAGCTACCCTTGA 1257 0.4527 MSSASSSYSFTTCVLFLFVLLMSCFMNNLSAKHQHLHKHQIRPKHTHNPPLNPRLYRAFLALQAWKHVIYSDPKNHTANWVGPSVCNYTGIYCAPSVDDPKVTVVAGIDLNFGDIAGFLPYEIGLLSDLALLHLNSNRFCGIVPETLSNLTLLYELDLSNNRFVGPFPSVVLRLPSLKFLDIRYNEFEGPLPPQLFNKSFDAVFVNNNRFTSSIPRNLGQSKASVLVFANNKFGGCLPESIVNFADTLEELVLINTSISGCLPQQVGFLYKLRVFDVSFNNIVGPIPYSLAGLSHLEQLNLGHNMMSGIVPMGVCDLPDLANFTFSYNFFCEEEGICQNLTSKRIVFDDRRNCLPEKPLQRSEKECSAQLEHPVDCFELCCPVGGSGNNVTAGSVAIPPAAVPAAMPVSAPVLAPSYP* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1221 418 PANTHER EXTENSIN-LIKE PROTEIN 1 417 - -
Lja3g1221 418 Pfam Leucine rich repeat 129 186 IPR001611 GO:0005515
Lja3g1221 418 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 417 - -
Lja3g1221 418 Gene3D Ribonuclease Inhibitor 59 350 IPR032675 -
Lja3g1221 418 SUPERFAMILY L domain-like 59 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1221 Lja-Chr3 12846217 12847865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1221 52 381 Leucine-rich Repeat extension Gene Families AT3G24480 56.193 6.14e-136 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1221 - - gmx:100802803 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1221 3 12846217 12847865 Lja3g1221 3 12846217 12847865 ECH