Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1220 ATGGTGTGTTTGGGGTTTGATATGGTTGAGGTTGAGGCTCAGAGGTTGGAGCTTTTGCTGGTTAAGAGGTGGGAATTGAGGATTTTGTTGAAGGTTGGGTTCGTGTGGTGGGTGTTTCTGTTGTTTGTTAGTCCTGTGGTGGGTCTGAGACCATTGAGGGACAGAACTAACTCGTGGGGTGATGAGTGGATTTTTGCAGGAAAAGATGAAAGTGACGTAGGTCCATTTTCACAATGGAACATAACCGGAACTTATAGAGGGACTTGGAAGTTTTTAGATACCACAAACGGCTCTTCCAGATTTTCAGAAATCAGAAAAATAAATGGAAATTCTGTAATTGAATTAGTCAGTACGCCCACAAAGATAACTGGTGTACATTATGTGCAGGGAGTAATTATATTCCATGATGTGTTTGACAATGAATACAATGTTGGTGGTTCTCAAATCAGAGTAGAAGGTGTATATATATGGCCATTTAGACAACTTCGAATGGTAGCGAACAGCGGAAAAGAGGGAGGGTTGAATCAGGATGGAGATTATATATTATCCAATCCGTATCATCTGCTTGGTGTTTTCTCATCCCAAGTATTCCAAGAATCTTCTCGACATAAGATGTGGAGAAGAAAGCATTCTCCATTTCATGGCATGGACAAACACTGTAATGTAGAAATTGCTGCACGGGTTTCACGCTTGTCATCTTCAAGACATGAAGGGGAGCATGATTCTTTTCAGCTTGAAGGGTTAATGGAAAGTCCTTCTGTGGATGATGATGTAGATTGCTTCTCACCTTTACAGTTAAATGCAACATCGATTAACATTGAAGTCTACTATAGTAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTCTCGTTCTTGCAAGTTCTTCTGTTGATTCGGCAAATGGAGCATAGCAATACCCAATCTGGGGCTGCCAAGGTTTCAATAATAATGATTGGTCAGCAAGCTATAGTGGATGCTTATCTTTGCCTTATACATCTTACAGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAATAGGCCTATGACTAATGGTGAAGGTTGGGAGACAATGAGGCGTGAGCTTTCAGTTTTGTACAGCCGTTTCTATGGGATCTTGTTGGGAGGCATTCTGCTAATGTATGAATTTCATAATTACATGAGACCTGTTCTTCTTCTCGTGTACTCCTTCTGGATACCTCAAATAATCACCAATGTTGTTCGTGACTCCCGCAAACCATTGCATCCTCATTATATCTTAGGCATAACTGTTACTCGCCTCGCGATCCCATTATATATTTTTGGTTGTCCTAACAACTTCTTGCGCATAGAACCGGATCAGAGCTGGTGTGCTAGTTTGTCTGTATTTGTTGGACTTCAAGCTATAATTCTCCTTCTTCAGCACTATCTCGGGTCCCGTTGGTTCATTCCTCATCAGATCCTACCTGAGAAATACAGCTATTATAGGAGGTTTGCTCCAGATACAAGCCATGCCACAGACTGTGTTATTTGCATGACAGCCATTGATGTTACGCCGCGGTCAAATGATTGCATGGTAACACCTTGTGATCACTTTTTCCACTCTGGCTGTTTACAAAGATGGATGGATATAAAGATGGAATGCCCAACTTGCCGGCGCGCGCTTCCACCAGCATGA 1737 0.4151 MVCLGFDMVEVEAQRLELLLVKRWELRILLKVGFVWWVFLLFVSPVVGLRPLRDRTNSWGDEWIFAGKDESDVGPFSQWNITGTYRGTWKFLDTTNGSSRFSEIRKINGNSVIELVSTPTKITGVHYVQGVIIFHDVFDNEYNVGGSQIRVEGVYIWPFRQLRMVANSGKEGGLNQDGDYILSNPYHLLGVFSSQVFQESSRHKMWRRKHSPFHGMDKHCNVEIAARVSRLSSSRHEGEHDSFQLEGLMESPSVDDDVDCFSPLQLNATSINIEVYYSKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIIMIGQQAIVDAYLCLIHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPMTNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYMRPVLLLVYSFWIPQIITNVVRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFLRIEPDQSWCASLSVFVGLQAIILLLQHYLGSRWFIPHQILPEKYSYYRRFAPDTSHATDCVICMTAIDVTPRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRALPPA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1220 578 Pfam Ring finger domain 527 572 IPR001841 -
Lja3g1220 578 SMART ring_2 528 571 IPR001841 -
Lja3g1220 578 ProSiteProfiles Zinc finger RING-type profile. 528 572 IPR001841 -
Lja3g1220 578 SMART ringv_2 527 572 IPR011016 GO:0008270
Lja3g1220 578 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 15 578 - -
Lja3g1220 578 PANTHER RING ZINC FINGER PROTEIN 15 578 - -
Lja3g1220 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 517 578 IPR013083 -
Lja3g1220 578 SUPERFAMILY RING/U-box 527 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1220 Lja-Chr3 12833602 12844288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1220 528 575 C3H Transcription Factor Family AT4G12190 39.583 6.58e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1220 K23788 - gmx:100817871 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1220 3 12833602 12844288 Lja3g1220 3 12833602 12844288 ECH