Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1218 ATGTCGCTGCAGGCTCTGAAGGAAACTCTGAGACATTGCACAACCCAGCAATCACAATCACAATCACAACCACCTTCTTCTTCTTCATCCCTTACCCAAACACACCGCAATTCGATTCTCCACTCTTCTGATTCCCAATTCCCAATCCATCGAATACCCCCTAAATCCTCTCTCTCCCTCCAGCTTCTCCGACTTCAAGAGCCAACTCTTCAACCCCACATTCCCCTTCACTCCCAAACCCAAACCCATCAACAACAACCAAAACAAGAACCAGAACAAGAACAAGAAGAACAAGAAGAAGAAGAGCCAGAGTTAAACAGGGCGAAATTCTGCACAGCCAAAACATCCCAGTTTCAATTTGATCACACTGGACCCTTTGAGTCTTTAGTGTTGTCTTCACAAGGAGAAGCTCCTGTTGTTCAGGTCCCTGCGTCTATAAATTGTAGACTGCTTGAGTATCAAAGAGAGGGAGTGAAGTTCTTGTATGGTTTGTACAAGAACAATCATGGAGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCTATAGCATTTCTTGCTGCCATCTTTGGTAAAGAAGGAGAGTCTGTTCTAAGTGAAAACTGGGTAAAGAAAAGAGACCCGGTATTAATAATTTGCCCAAGTTCTGTTATTCACAACTGGGAGGACGAATTCTCTAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATCTGGTATATGATAAATTGCAAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACAGTTACAGAATTCATGGCAGATCCTTTTTAGATATCAACTGGAACGTCGTGATTATTGATGAGGCTCATCGACTTAAGAATGATAGATCAAAACTCTATAAAGCATGTTTAGAAATCAAAACCCTGAGACGCTATGGTCTTACTGGGACCGTAATGCAAAATAAGATTATGGAATTGTTCAATCTCTTTGACTGGGTTGCACCTGGATCCCTTGGAACAAGGGAACACTTTCATGATTTCTACGATGAACCCCTTAAGCTGGGCCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAGCAACACCTTGTGACAGTTCTTCGTAAATATATGTTGAGAAGGACAAAGGAGGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTATTCTGTGCAATGAGTGATTTGCAAAAACGTGTTTACAGAAGAATGTTACAGCTTCCCGATATTCAGTGCCTTATAAATAAAGACCTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTTGAATGTTGTAAAAGGCTGATACACGATGGAGCTATTTGGCCTTACTATCATAGAGATAAGGAAAATGGTTGTGATTCATGCCCCTTTTGCATTGTCCTTCCATGCCTCCTCAAGCTTCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGATCCTGACAAACAAATTAAAGATGCTGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGATTTAGTGGGTGGGAACATGCAGAATGAGAGTTTCATGGGTCTAAGTGATGTGAAAGATTGTGGCAAAATGCGAGCACTTGAAAAACTATTGTTCTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATATTGGAAAAATTTCTCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAGTTTACGTCAGTCTATAGTTGACGATTTCAACTCAAGTCCGAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTATTATTTGATCCCAACTGGAATCCTGCACACGATTTACAAGCTCAGGACAGATCCTTTCGCTATGGGCAGAAGCGGCAGGTTATGGTGTTCCGTCTTCTCTCAGCTGGTTCACTTGAAGAACTAGTTTATACTCGGCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTTCAGGACTGCAAGGAATTCCAAGGGGAGCTTTTTGGAATATGCAATTTATTTCGAGATTTATCTGATAAGCTATTCACCAGTGAGATCATTGAATTACATGGGGCAAGTAAAGAACATGGGCATAAACCAGAACAAGAAGAAAAAATAAATCATTCAGAAGAAACGGGTTCATTAGCATCAGAGTCTGAAACCAAGTTATGTACTGAATCTGGAACGGCTGCAACAAGTAAACCAGATCTTGCATTTGAAGACCTTGGCATTGTCTATGCTCATCGCAATGAAGACGTTGTCAACTCAAGACCAGGGATTCAAGAGAAAAAACATACCACCACCCGTTCAAATGATGGCCTAAGCGAGCCAAGCATCTCTTCAGCCCACAGAAGAAAGAAACCAGACTGTGTAACTAAAAAACAGAAACTTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGCCTCCTTGCCCAGTTTATGGGCATGGGAGAGCTTGCATTTAGCAAATGGTTACTATCAGCCTCTCCACTGGAGAGGGAAAAAGTGCTTGTAGACTACAAGAAGAAAAAGAAAATACCTCATGGTTGA 2676 0.4182 MSLQALKETLRHCTTQQSQSQSQPPSSSSSLTQTHRNSILHSSDSQFPIHRIPPKSSLSLQLLRLQEPTLQPHIPLHSQTQTHQQQPKQEPEQEQEEQEEEEPELNRAKFCTAKTSQFQFDHTGPFESLVLSSQGEAPVVQVPASINCRLLEYQREGVKFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAIFGKEGESVLSENWVKKRDPVLIICPSSVIHNWEDEFSKWSNFSVSIYHGANRDLVYDKLQANGVEILITSFDSYRIHGRSFLDINWNVVIIDEAHRLKNDRSKLYKACLEIKTLRRYGLTGTVMQNKIMELFNLFDWVAPGSLGTREHFHDFYDEPLKLGQRSTAPDRFVQIANKRKQHLVTVLRKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRLIHDGAIWPYYHRDKENGCDSCPFCIVLPCLLKLQQISNHLELIKPNPKDDPDKQIKDAEFAAAVFGPDIDLVGGNMQNESFMGLSDVKDCGKMRALEKLLFSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTSLRQSIVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVLFDPNWNPAHDLQAQDRSFRYGQKRQVMVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIELHGASKEHGHKPEQEEKINHSEETGSLASESETKLCTESGTAATSKPDLAFEDLGIVYAHRNEDVVNSRPGIQEKKHTTTRSNDGLSEPSISSAHRRKKPDCVTKKQKLPLIDERKRTQYSLLAQFMGMGELAFSKWLLSASPLEREKVLVDYKKKKKIPHG* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1218 891 Pfam SNF2-related domain 165 424 IPR000330 GO:0005524|GO:0140658
Lja3g1218 891 Gene3D - 125 382 IPR038718 -
Lja3g1218 891 MobiDBLite consensus disorder prediction 733 752 - -
Lja3g1218 891 MobiDBLite consensus disorder prediction 1 52 - -
Lja3g1218 891 PANTHER SNF2/RAD54 FAMILY MEMBER 39 824 - -
Lja3g1218 891 SMART ultradead3 146 341 IPR014001 -
Lja3g1218 891 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 333 IPR014001 -
Lja3g1218 891 MobiDBLite consensus disorder prediction 796 834 - -
Lja3g1218 891 MobiDBLite consensus disorder prediction 78 105 - -
Lja3g1218 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 383 IPR027417 -
Lja3g1218 891 CDD SF2_C_SNF 537 662 - -
Lja3g1218 891 Pfam Helicase conserved C-terminal domain 539 651 IPR001650 -
Lja3g1218 891 MobiDBLite consensus disorder prediction 733 760 - -
Lja3g1218 891 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 39 824 - -
Lja3g1218 891 MobiDBLite consensus disorder prediction 820 834 - -
Lja3g1218 891 MobiDBLite consensus disorder prediction 796 811 - -
Lja3g1218 891 Gene3D - 395 763 IPR027417 -
Lja3g1218 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 706 IPR027417 -
Lja3g1218 891 SMART helicmild6 568 651 IPR001650 -
Lja3g1218 891 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 542 695 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1218 Lja-Chr3 12808699 12815684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1218 540 681 RAD5 or RAD16-like Gene Family AT5G43530 40.141 3.41e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja3g1218 SNF2_N 2e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1218 K20098 - gmx:100781003 1386.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1218 3 12808699 12815684 Lja3g1218 3 12808699 12815684 ECH