Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1217 ATGGCAGGCCGATTTCTAAGCATTTTTCTTTTGATGATACATATGTTGCTTCTTAGCTCATCTCAAGCAGCAGCAAAGGAATTTCATGTTGGTGGCAAAGATGGATGGGTGCTGAAACCTTCTGAAGATTACAAACATTGGGCTCAGAGAAACAGATTTCAAGTGAATGATACTCTATATTTCAAGTACAAGAAAGGGATTGATTGGGTTCTTGTTGTGAACAAGGAGGACTATGATTTGTGCAACACAAGCAACCCCATAAAAAAGATGGACGGTGGGAATTCATTTTTTAACCTCGAGAAATCAGGTCTTTATTTCTTCATCAGTGGAAACATTGACCACTGCAAAAATGGTCAAAAACTCGTAGTCCTAGTTATGGCCATGAAGCACACTGCTCATGCACCACCATCTGAGGCACCAGAAATTCAATATGTTGGTTTCACTGGTCCGACACCATCACCGTTCGAGGCTTCAGGCTCCGTGAAGTTTGGTGGTTCAGTGGGTGTGGGTTTGGGTGTGTGGATTGGAGTTGTTATGAGTGTCATCAACTTTATATGA 558 0.4194 MAGRFLSIFLLMIHMLLLSSSQAAAKEFHVGGKDGWVLKPSEDYKHWAQRNRFQVNDTLYFKYKKGIDWVLVVNKEDYDLCNTSNPIKKMDGGNSFFNLEKSGLYFFISGNIDHCKNGQKLVVLVMAMKHTAHAPPSEAPEIQYVGFTGPTPSPFEASGSVKFGGSVGVGLGVWIGVVMSVINFI* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1217 185 SUPERFAMILY Cupredoxins 25 126 IPR008972 -
Lja3g1217 185 Gene3D - 24 131 IPR008972 -
Lja3g1217 185 CDD OsENODL1_like 26 126 IPR041846 -
Lja3g1217 185 ProSiteProfiles Phytocyanin domain profile. 26 127 IPR003245 GO:0009055
Lja3g1217 185 PANTHER EARLY NODULIN-LIKE PROTEIN 2 8 143 - -
Lja3g1217 185 PANTHER BLUE COPPER PROTEIN 8 143 IPR039391 GO:0009055
Lja3g1217 185 Pfam Plastocyanin-like domain 36 119 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1217 Lja-Chr3 12805978 12806920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1217 4 179 Phytocyanin Superfamily AT4G28365 44.211 4.35e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1217 - - lja:Lj6g3v1316280.1 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1217 3 12805978 12806920 Lja3g1217 3 12805978 12806920 ECH