Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1213 ATGGAAAACAAAAAGCACCCTCACCTTCTGGGAACTAATCAACCATCTTCAACGACTAAGGTTGAAAGAAGGGTCGTAGAAAAAAACAGAAGAAACCAGATGAAGATCCTTTATTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCTAAGGAAGCGGTGCCATTGCCTGACCAAGTAGATGAGGCCATCAACTACATCAAGAGCCTTGAGGAAAAGATGAAGATGGCTCAGGAGAAGAAAGAAAGCTTAGGTGGAAGGAATAAGAGATCCCGTGGTAGCTGTTCTAGTTCTATTGCTGCAACGGTGGTTTCAAAATCGCCACAACTTGAGGTTCACGAAACAGGTTCATCTTTAGAAGTTGTTCTTACATGTGGGTTGGACAACCAGTTCATTTTTTATGAAATCATCCGAATACTGCAAGAAGAGAACATTGATATCAGGAGTGCCAATTCCTCAATGGCTGGAGATTCAATGCTTCATGTGGTGCATGCTGAGATTCCGCAGTCTTATCTTCATTTCGGAGCAACCAAAGTTAGTGAGAGATTGAAAAGGTTTGTGAATGGATCCTCAAGTGATATGGAAATACACCCTGAGCTGTGGGATTTTGAAATTGGTACTGATATGTGGGGTTTCTAG 639 0.4194 MENKKHPHLLGTNQPSSTTKVERRVVEKNRRNQMKILYSKLNSLLPNYNPKEAVPLPDQVDEAINYIKSLEEKMKMAQEKKESLGGRNKRSRGSCSSSIAATVVSKSPQLEVHETGSSLEVVLTCGLDNQFIFYEIIRILQEENIDIRSANSSMAGDSMLHVVHAEIPQSYLHFGATKVSERLKRFVNGSSSDMEIHPELWDFEIGTDMWGF* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1213 212 MobiDBLite consensus disorder prediction 77 100 - -
Lja3g1213 212 Coils Coil 60 87 - -
Lja3g1213 212 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g1213 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 18 70 IPR011598 GO:0046983
Lja3g1213 212 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 15 194 - -
Lja3g1213 212 Gene3D - 12 98 IPR036638 GO:0046983
Lja3g1213 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 88 IPR036638 GO:0046983
Lja3g1213 212 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 15 194 IPR015660 GO:0003700|GO:0006357
Lja3g1213 212 Pfam Helix-loop-helix DNA-binding domain 21 71 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1213 Lja-Chr3 12778791 12780518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1213 21 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.678 7.10e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g1213 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1213 - - gmx:100817883 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1213 3 12778791 12780518 Lja3g1213 3 12778791 12780518 ECH