Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1209 ATGGGTTGTCTATGTTCCAAGAGTTCAGCTGTGGAAGACAGCAATGAAGGTGTCCCTAAGAAACTTCAATATCAATCAAGTAGCACAAGGCCTTCGGAGTTGAATGTTTTGCGGTTGAATTCAAGCAAGAGGGTTGAAGGGGGTAGGGTGAAAGATGTGGTATTAGATGGAGGTGATGTGAAGGTTTCTTTGGTTGACAAGAAAATCAATGGATCAGTGAAATTGTATGATGATCAAAGTGGGAGGAAGATGGTAGTGAAGCCTGAAATTGCTGTTATTGATCATCCTGGAATTGGAAGGGTTCCGAAGGCTGTAGAAGGAGAGCAAGTTGCGGCAGGATGGCCGGCTTGGCTTTCTTCCGTTGCCGGTGATGCTATCAAGGGATGGTTACCGCGAAGCGCCAATTCTTTTGAGAGGTTACATAAAATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCACGCGACGTGACTAACCAAAAGATCGTTGCATTGAAGAGGGTCCGCTTTGACAATCTTGATCCTGAGAGTGTCAAGTTTATGGCGAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAATATAATAAAGTTGGAGGGTTTGATAACTTCACAGACATCTCGTAGCTTGTACCTTGTTTTTGAGTATATGGAGCACGATCTAACAGGACTTGCATCAAATCCTGAGATCAAGTTCTCTGAACCCCAGCTGAAATGCTACATGCGGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTATCCTCCACCGCGACATAAAGGGCTCAAATCTCCTCATCGACAATAATGGCGTCTTAAAGATTGCTGATTTTGGTTTGGCAAGTTCTTTTGACCCTCGTCAGAGTATTCCGTTGACAAGCCGTGTAGTAACTCTGTGGTATAGACCACCTGAACTTCTACTCGGAGCTAATCGTTATGGGGTTGCAGTAGATTTATGGAGCACTGGTTGCATACTGGGGGAACTATATACTGGCAGACCCATTTTGCCGGGCAAAACAGAGGTTGAGCAGTTGCATCGGATTTTTAAACTCTGTGGCTCACCATCTGACGACTATTGGCTTAAATCGCGGTTGCCACATTCAACTGTATTCAAGCCTCCACACCATTATAGGCGATGTATTACTGAGACATTTAAGGAATACCCATCTACTGCTGTTAAGCTTATAGAGACCCTACTTTCTGTAGATCCAGCACAAAGAGGAACAGCAGCTGCTGCTCTGAAAAGCGAGTTCTTTACATCAGAGCCTCTCCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCCAGCAAGGAGATTGACTCTAAATTGCGGGATGAATCAACCAGAAGGCAAGGAGCTGTTGGTGAAAGGGAGCAAAAGGTTGGCTCAGGGGTTAGACAAGAAAAAGGACCTAGGGCCCATGTCACAACAAAAGGCAATGTTGACATAGGCGCATCAATACAGCAAGCGCAACGTCATTCCAGCTCAAATCACCGGAGTGAATTGTCCTACCCTCATAGAGAACCTGTGTCTGGGTTTCTGGGTGTCGCACACAAACAGTCAGAAGATGTTAAAGAAATGGGAAATAATTCATCTGGGCATCTTTTCAAGAGGCCTTCACATTCAGGTCCTTTGGTTCCTGGTTATGGCTGGGCAAAGGGTGCGAAGGAAGTTGATGATGGACCTCCAGTTTCGAACAGAGTGAACCTATCGAAACTATCTGGGCTTGTGGCATCTAGGACTTCATTGCCTGAAGATCAGGGGGAAAAACCAGCTCACTTGCACCACAGAAAACCAGTTGAAGTAAGAAAATCCGTGGAGGCAACTAGTGGATCAGAGTCACGAAGAAGGCACGATAAAAAACGGATTGTTGATCAAAGTCAAATTGACAATCGGAGGGTCCCCGCTGAAAAATCAACTCCGGATGGGCGTGGATCCAGTGCGTCTGGAGGAAACAAGATATACATGTCAGGTCCGTTACTCGTTTCGTCGAACAATATGGATCAGATGCTCAAAGAGCATGATAGAAAGATTCAGGAGTTTTCGAGACGAGCCAGAATCGACAAATCAAGAACAAAAGGTGAGAAAGTTCGTGCACAGAGAAAGTAG 2118 0.4514 MGCLCSKSSAVEDSNEGVPKKLQYQSSSTRPSELNVLRLNSSKRVEGGRVKDVVLDGGDVKVSLVDKKINGSVKLYDDQSGRKMVVKPEIAVIDHPGIGRVPKAVEGEQVAAGWPAWLSSVAGDAIKGWLPRSANSFERLHKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLEGLITSQTSRSLYLVFEYMEHDLTGLASNPEIKFSEPQLKCYMRQLLSGLDHCHSHGILHRDIKGSNLLIDNNGVLKIADFGLASSFDPRQSIPLTSRVVTLWYRPPELLLGANRYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDDYWLKSRLPHSTVFKPPHHYRRCITETFKEYPSTAVKLIETLLSVDPAQRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDSKLRDESTRRQGAVGEREQKVGSGVRQEKGPRAHVTTKGNVDIGASIQQAQRHSSSNHRSELSYPHREPVSGFLGVAHKQSEDVKEMGNNSSGHLFKRPSHSGPLVPGYGWAKGAKEVDDGPPVSNRVNLSKLSGLVASRTSLPEDQGEKPAHLHHRKPVEVRKSVEATSGSESRRRHDKKRIVDQSQIDNRRVPAEKSTPDGRGSSASGGNKIYMSGPLLVSSNNMDQMLKEHDRKIQEFSRRARIDKSRTKGEKVRAQRK* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1209 705 MobiDBLite consensus disorder prediction 440 478 - -
Lja3g1209 705 SMART serkin_6 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1209 705 MobiDBLite consensus disorder prediction 8 29 - -
Lja3g1209 705 MobiDBLite consensus disorder prediction 484 501 - -
Lja3g1209 705 MobiDBLite consensus disorder prediction 680 698 - -
Lja3g1209 705 MobiDBLite consensus disorder prediction 645 663 - -
Lja3g1209 705 CDD STKc_CDK9_like 137 421 - -
Lja3g1209 705 Gene3D Phosphorylase Kinase; domain 1 124 219 - -
Lja3g1209 705 MobiDBLite consensus disorder prediction 528 551 - -
Lja3g1209 705 MobiDBLite consensus disorder prediction 680 705 - -
Lja3g1209 705 MobiDBLite consensus disorder prediction 583 663 - -
Lja3g1209 705 MobiDBLite consensus disorder prediction 425 512 - -
Lja3g1209 705 Pfam Protein kinase domain 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1209 705 PANTHER CELL DIVISION PROTEIN KINASE 1 692 - -
Lja3g1209 705 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
Lja3g1209 705 MobiDBLite consensus disorder prediction 589 642 - -
Lja3g1209 705 ProSiteProfiles Protein kinase domain profile. 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1209 705 Gene3D Transferase(Phosphotransferase) domain 1 220 459 - -
Lja3g1209 705 PANTHER CYCLIN-DEPENDENT KINASE 1 692 - -
Lja3g1209 705 SUPERFAMILY Protein kinase-like (PK-like) 131 429 IPR011009 -
Lja3g1209 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Lja3g1209 705 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1209 Lja-Chr3 12736205 12743642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1209 129 462 Core Cell Cycle Gene Families AT5G10270 48.571 1.09e-113 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja3g1209 Pkinase 2.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1209 - - gmx:100807590 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1209 3 12736205 12743642 Lja3g1209 3 12736205 12743642 ECH