Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1199 ATGGCCTTAGATGCATACTTGGAGGAGACTATGTCTCAAATTGATTCCTTTGAAGATAGACCATCTTTGGAAAAATGGAAATCCTCCACTGATTTCATTGCAGAGTCTGATAGAACTTCCTCTGGTGGCTTTGACTGCAACATCTGCCTAGACTGTGTTCAAGATCCAGTGGTCACTCTCTGTGGCCATCTTTACTGCTGGCCCTGCATTTACAAATGGCTTAATTCGAATAGCGCTTCTTCAGAAAACGTGGAGCAGAATAAGCCACAATGTCCAGTGTGCAAATCAGAAGTTTCTCAATCCTCACTAGTTCCATTGTATGGCCGTGGCCAAACCACAATAGCTTCTAAAAACAAGGCTTATCAACAAGTTGGGAGTGTCATCCCAAGAAGACCCTTGGGTCCCATATTGTATAATGCTACATCAACTGCTTCCGAACCAACTTTTCAAAGTAACCAGCATTTCCATGATCCTTATCATCGTCATCATCATCATCATCATCATCATCATCAAATGTTCAACTCAATTCCAAGCAGTTATAGTACCTCACCAATGTTTAGCACAAGTGGTTCACTTGATAACACGTTTGGGATCTTTGGTGAGATGATGTATGCAACGGTGTTTGGGAACCAGGTGTCAAACATGTACTCGTATAACCAACCAGGGAGCAGTAATCCGAGGATTAGAAGGCATCTAATGAGGGTTGATAAATCACTCAGCAGGATCTGTTTTTTCCTCTTCTGCTGCATGGTGTTGTGTCTTCTCTTGTTCTGA 774 0.4238 MALDAYLEETMSQIDSFEDRPSLEKWKSSTDFIAESDRTSSGGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLNSNSASSENVEQNKPQCPVCKSEVSQSSLVPLYGRGQTTIASKNKAYQQVGSVIPRRPLGPILYNATSTASEPTFQSNQHFHDPYHRHHHHHHHHHQMFNSIPSSYSTSPMFSTSGSLDNTFGIFGEMMYATVFGNQVSNMYSYNQPGSSNPRIRRHLMRVDKSLSRICFFLFCCMVLCLLLF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1199 257 SUPERFAMILY RING/U-box 45 101 - -
Lja3g1199 257 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Lja3g1199 257 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Lja3g1199 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 257 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lja3g1199 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 131 IPR013083 -
Lja3g1199 257 SMART ring_2 46 94 IPR001841 -
Lja3g1199 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 4 257 - -
Lja3g1199 257 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Lja3g1199 257 CDD RING-HC_AtRMA_like 44 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1199 Lja-Chr3 12626990 12630302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1199 22 257 C3H Transcription Factor Family AT4G28270 37.344 3.11e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1199 K10666 - gmx:100785491 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1199 3 12626990 12630302 Lja3g1199 3 12626990 12630302 ECH