Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1190 ATGCAGCTCCACCGGTCGAAACTGAGCCTCTTATTCCTCAGCCTGGCCTTGAATCTCACACTGCTGCGCGCCGCGGCGGCGGTACAGCCTCAGCACCACGCTCTCGACCTGCATTGGCACCCCGGAACCGCCACCTGGTACGGCGACCCAGAAGGCGACGGTAGCACCGGTGGGGCATGTGGGTACGGAACAATGGTGGATGTGAGGCCGTTGAGGGCGCGGGTAGGGGCGGTGGGGCCGCTGCTGTTCATGAACGGAGAAGGGTGCGGCGCGTGCTACAAGGTCAAGTGCTTAGACAGCAGCATGTGCTCCAGGCGTGCTGTTACAGTTATTATCACCGACGAGTGTCCCGGTTGTCCCACCGACCAGACCCACTTTGACCTCAGCGGCGCCGCCTTTGGCCGCATGGCTATCGCCGGCGAGAACGGCCAGCTCAGAAACCGTGGCCAAATCCCAGTTGTTTACAGAAGAACTCCTTGTAAATACCCTGGAAGAAAAATTGCCTTCCATGTTAATGAAGGTTCCACACCATTTTGGCTATCTCTTCTGGTTGAGTTTGAGGATGCAGAGGGAGATATTGGCTCCATGCATATACAAGAGGCAGGGTCTAGTGAGTGGCTAGAGATGAGTCATCTATGGGGTGCAAATTGGTGCCTTAATGGGGGGCCTATAAAGGGACCATTCTCTGTGAAACTAAGCACCTCCACTGGGAGAAGCCTCTCTGCCAGAGATGTTATTCCCAGCAATTGGGTTCCAAAAGCCACTTACACTTCTCGCCTAAATTTCTACCCCTAG 795 0.5572 MQLHRSKLSLLFLSLALNLTLLRAAAAVQPQHHALDLHWHPGTATWYGDPEGDGSTGGACGYGTMVDVRPLRARVGAVGPLLFMNGEGCGACYKVKCLDSSMCSRRAVTVIITDECPGCPTDQTHFDLSGAAFGRMAIAGENGQLRNRGQIPVVYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIQEAGSSEWLEMSHLWGANWCLNGGPIKGPFSVKLSTSTGRSLSARDVIPSNWVPKATYTSRLNFYP* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1190 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Lja3g1190 264 Pfam Expansin C-terminal domain 167 247 IPR007117 -
Lja3g1190 264 Pfam Lytic transglycolase 80 155 IPR009009 -
Lja3g1190 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 165 IPR007112 -
Lja3g1190 264 SUPERFAMILY Barwin-like endoglucanases 38 164 IPR036908 -
Lja3g1190 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Lja3g1190 264 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Lja3g1190 264 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Lja3g1190 264 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Lja3g1190 264 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Lja3g1190 264 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Lja3g1190 264 SUPERFAMILY PHL pollen allergen 165 258 IPR036749 -
Lja3g1190 264 Gene3D - 24 160 IPR036908 -
Lja3g1190 264 Gene3D - 161 259 IPR036749 -
Lja3g1190 264 PANTHER EXPANSIN-B3 4 264 - -
Lja3g1190 264 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Lja3g1190 264 PRINTS Major pollen allergen Lol pI signature 137 152 IPR005795 GO:0005576|GO:0019953
Lja3g1190 264 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Lja3g1190 264 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Lja3g1190 264 PRINTS Major pollen allergen Lol pI signature 234 251 IPR005795 GO:0005576|GO:0019953
Lja3g1190 264 PANTHER EXPANSIN-LIKE PROTEIN B1 4 264 - -
Lja3g1190 264 SMART dpbb_1 75 155 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1190 Lja-Chr3 12532884 12536703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1190 1 220 Expansin Gene Family AT4G28250 63.636 1.47e-96 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1190 K20628 - gmx:100804525 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1190 3 12532884 12536703 Lja3g1190 3 12532884 12536703 ECH