Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1182 ATGGACACAGCTAAGAACAGTGGAAAATCTAACAAAGAGATTGTTGATGACACTTCCAAAATTATTGGTGAAGGTGAAGGTAAAAGTCAATGGAAGCCAGTTTTTGATGATGCTTCCAAGTCACATAGACCTCTCAAGAAGATTTGTAGCCCTGAACTCCAAACCCCAAACAAACTATCCTCTGATATATCTCTGCAACCTCCTTCCTCCTCTTCTGTTCCTCCTTCATCTAGAATATTCTTTCCTTTTGCTTTGGAAGACTCTCAACCTCCAATGCCATTCCCACACCAATCTGGAACCACAAATTTTTCTCTTCATCGAACTCAACAACAGATAATATCTTTTGAGCCACAGCAGAACATGGGGTATCCACAATTCTTAGCCCAAAATTCTTCTGTCCCTCTTCACCAACAACAAAAACTTCATCATCTAAGTCCTAGAGAAAGGGTGATGATGATGAATAACAGGTTAGGAGCAGGTAAGAGACCAATGTTTGGACCCCCAACACAGGCTCTGAATGCTACCAAGCTCTATAGAGGAGTGAGGCAACGCCATTGGGGAAAATGGGTAGCTGAGATTCGACTGCCTCGAAACAGGACTCGCCTCTGGCTTGGGACATTTGACAAGGCTGAAGATGCTGCCATGGCCTATGATCGTGAAGCATTTAAGCTGAGAGGAGAGAACGCTAAGCTCAATTTCCCTCACCTCTTCCTTAACAAGGATGAAGCATCTTCCATAACAGCTCCGACTCCTTCTCCTCCTTTTCATGAAGGTTCAACATCAACAACATCAAAGCAACCTGAACCAATTCGACAATCAGCACCACTAACAGGAGAGAATGCTGACAATGATGCTGAAACTGGGATTTCACAGTCTCAGGAATTGGTTTGGGGTGAAATGGCTTCATGGTTTAATGCAATTCCTGAAGGTTGGGGTCCTGGTAGCCTTGTGTGGGATGATTTGGACCTAAACAGTACTAATCTTCTTTTGCAGTCATCACAGCTTCCTTTTATGAATCAAAATCAGCAAGAGTTTCATGATGGCAATGATGCTCAGAGACCAGGAGATAACTTTGTCCAATTGTGCTCAAAGTTGTCACTAAGCCTCCTTCCAATTATGTGA 1122 0.4323 MDTAKNSGKSNKEIVDDTSKIIGEGEGKSQWKPVFDDASKSHRPLKKICSPELQTPNKLSSDISLQPPSSSSVPPSSRIFFPFALEDSQPPMPFPHQSGTTNFSLHRTQQQIISFEPQQNMGYPQFLAQNSSVPLHQQQKLHHLSPRERVMMMNNRLGAGKRPMFGPPTQALNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDKAEDAAMAYDREAFKLRGENAKLNFPHLFLNKDEASSITAPTPSPPFHEGSTSTTSKQPEPIRQSAPLTGENADNDAETGISQSQELVWGEMASWFNAIPEGWGPGSLVWDDLDLNSTNLLLQSSQLPFMNQNQQEFHDGNDAQRPGDNFVQLCSKLSLSLLPIM* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1182 373 Pfam AP2 domain 178 226 IPR001471 GO:0003700|GO:0006355
Lja3g1182 373 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 12 353 - -
Lja3g1182 373 MobiDBLite consensus disorder prediction 1 74 - -
Lja3g1182 373 Gene3D AP2/ERF domain 177 235 IPR036955 GO:0003700|GO:0006355
Lja3g1182 373 MobiDBLite consensus disorder prediction 30 47 - -
Lja3g1182 373 MobiDBLite consensus disorder prediction 244 286 - -
Lja3g1182 373 CDD AP2 176 236 IPR001471 GO:0003700|GO:0006355
Lja3g1182 373 MobiDBLite consensus disorder prediction 1 23 - -
Lja3g1182 373 PRINTS Ethylene responsive element binding protein signature 178 189 IPR001471 GO:0003700|GO:0006355
Lja3g1182 373 PRINTS Ethylene responsive element binding protein signature 200 216 IPR001471 GO:0003700|GO:0006355
Lja3g1182 373 SUPERFAMILY DNA-binding domain 177 235 IPR016177 GO:0003677
Lja3g1182 373 MobiDBLite consensus disorder prediction 53 74 - -
Lja3g1182 373 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 12 353 - -
Lja3g1182 373 ProSiteProfiles AP2/ERF domain profile. 177 234 IPR001471 GO:0003700|GO:0006355
Lja3g1182 373 SMART rav1_2 177 240 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1182 Lja-Chr3 12448644 12450814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1182 1 327 AP2-EREBP Transcription Factor Family AT2G20880 42.319 1.17e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja3g1182 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1182 - - gmx:100801882 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1182 3 12448644 12450814 Lja3g1182 3 12448644 12450814 ECH