Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1177 ATGGAGACTGTTCTTTCCAAACACTCCCCCCCTTTGGCCTTCAAGGGTGTGAGCAAGGAGGAGGAAGAATCATTGCTTGGACAAGTTGAAATATGGAGGTACATGTGTGCATTCACAGACTCTGTTGCTCTGAAAAGTATTATAGAGCTGCGCGTAGCTGACATCATAGACCGTTTTGGCAAACCACTTTCCCTGTCCCAAATTGCTGCCAACATTGAAGATGCACCCTCCCCAGATGTCAAATTGCTAGAAAGATTGATGAGAGTGATGGTGAGAAGAAAGATCTTCAGTGCAGAGAAGTCAGAGAGTGGAGAGACGCTCTATGGCTTAACACGGGCTTCAAAATGGATCCTAAGGGACACAAAAATGACCTTAGCACCCATGTTGCTGCTAGAGAACCACCCTATTCACTTGAACCCTGCTCACTACATTAGTGACACTGTCAGGGAAGGCAAGGAAAATGGCACTCCCTTTTTAAGGTGCCATGGCCATGATCAATTTGAGATGACAGGTTTAGATGAAGAGTACAACAGGTTATTCAATGAGGGTATGGTCTGCACGGCTAGGATTGTGTCCAGGGCTGTTATCTCTGGGTACAAGGATGGGTTCAACCAGATTGAATCATTGGTTGATGTTGGAGGTGGTATTGGAGGATCTCTCTCTGAGATTGTCAGAGCCTACCCTCACATCAAAGCCATTAACTTTGACTTGCCTCATGTGGTCGCCACAGCACCACCCTACGATGGAATCACCCATGTTGGAGGAGACATGTTCGTCTCTGTTCCTAATGCTGATGCTATTTACATGAAGTGGATTCTTCATGACTGGAGCGATGAGCATTGCATCAAGATTTTGAAGAACTGCAGAGAGGCAATACCAGAGAAGACTGGAAAGGTCATCATTGTGGATCATGTTTTGCAGCCTGAAGGGAATGAACCATTTTCTGACACTGGCCATGCATTTGACATGATGCTGCTCGCACACAACTCTGGTGGGAAAGAAAGGACTGAAGAGAACTGGCAATATCTATTTAAAGAAACAGGATTCCCTCGTTACAACATCATCAAGATCAATGCCCTGCCATCCATCATTGAGGCATTTCCAATCTGA 1110 0.4559 METVLSKHSPPLAFKGVSKEEEESLLGQVEIWRYMCAFTDSVALKSIIELRVADIIDRFGKPLSLSQIAANIEDAPSPDVKLLERLMRVMVRRKIFSAEKSESGETLYGLTRASKWILRDTKMTLAPMLLLENHPIHLNPAHYISDTVREGKENGTPFLRCHGHDQFEMTGLDEEYNRLFNEGMVCTARIVSRAVISGYKDGFNQIESLVDVGGGIGGSLSEIVRAYPHIKAINFDLPHVVATAPPYDGITHVGGDMFVSVPNADAIYMKWILHDWSDEHCIKILKNCREAIPEKTGKVIIVDHVLQPEGNEPFSDTGHAFDMMLLAHNSGGKERTEENWQYLFKETGFPRYNIIKINALPSIIEAFPI* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1177 369 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 20 368 - -
Lja3g1177 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 368 IPR016461 GO:0008168
Lja3g1177 369 Gene3D Vaccinia Virus protein VP39 119 369 IPR029063 -
Lja3g1177 369 PIRSF O-mtase 12 369 IPR016461 GO:0008168
Lja3g1177 369 Gene3D - 14 117 IPR036388 -
Lja3g1177 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 366 IPR029063 -
Lja3g1177 369 Pfam Dimerisation domain 43 91 IPR012967 GO:0046983
Lja3g1177 369 Pfam O-methyltransferase domain 142 349 IPR001077 GO:0008171
Lja3g1177 369 PANTHER O-METHYLTRANSFERASE 20 368 IPR016461 GO:0008168
Lja3g1177 369 CDD AdoMet_MTases 209 306 - -
Lja3g1177 369 SUPERFAMILY "Winged helix" DNA-binding domain 21 120 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1177 Lja-Chr3 12236256 12245130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1177 42 355 Monolignol Biosynthesis Gene Families AT5G54160 40.498 1.23e-79 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1177 K22588 - gmx:100800801 663.299