Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1173 ATGGATGATAGCGATAGCGGCAGTGGCGGGGATCAAAAATTGAATAAGCGAGGTCCTAAGAGAAGAAGAAAGGTCATTAAAGAAGATGGTTCTAGTTCTAAGGCAAAGGTTGAAGAAACTGATGATCAGAACCCTATAAGTCCTGAAGGAATCAGCATTCCAGGGGGTTCCTATCAGTTTCGGAAGCGTCGTATAGTCAACAAACCAGAAGTGCACAAAATCAACAAGAGAGATTCTAAGGAGTCCTTAATGTGCCATCAATGTCAGAGAAATGATAAGGGCCCGGTTGTGAGGTGCACGAAATGTAACCGGAAAAGATTTTGCTACCCCTGCTTGGAACATTGGTATCCTCACTTGAAAGAGGAGGATGTTGCTGAGAAATGTCCTGTATGCCGTGGTAATTGCAATTGCAAAACATGCATGCGGTCCGATGAACTTCTTCAAAAACTGAAGAGTAAAGAAAATACCAACGAAGAAGAAGGTGACAAGGTTGAGCTCAGTAAGTATATGCTGAAATGTCTTCTGCCGTATTTAAAACAGCTGGATGAAGAACAAATTATAGAGAAGAAGATAGAAGCTAAGAGACAAGGGCTCTCAAGCTCAGAGCTAAAAGTAAAAGAGGCAGAATACTCTAAAAAAGAGCGCATTTTCTGTGATAACTGCAAGACGTCAATATTTGATTACCACAGAAGCTGTACGAAATGCTCGTTTGATCTTTGTCTTATTTGCTGCCGTGAGCTTCGTAATGGGCAGCTTCTTGGTGGTGCAGATCCGGTTGAGTTGGAGTTTGTCCTCCGAGGTCAAGGTTATTTGCATGGTATAAAAGAAAATAAAGAGGTAATAGAAAATATATCAGTTGCGGATGCCAACACAAAAATTCGTCAATGGTCAAGATCTGGTTGGCATGCTCACAAGGATGGTAGCATTCCCTGTCCACAATCCAATCATGAGAGTAACCATGGTTTTCTTGAACTGAGAAGCATACGTTTTCTGTGTTCCATCTCTGAACTAGTATGTAAAGCTGAAGAACTAGCGGAAGCATATAAGGTTGCTGGAGAGACTTTTGATAACTGCTGTTCTTGCTTGAAACTTGATAGAAACACAGATGATGAATATACTTATATGAGGAAGGCAGCTTCTCGTGAAGATTCCATTGACAACTTTTTATACACTCCTAGGGCTGTAGATCTACAGAAGGAGGATTTAAGACATTTTCAATCTCATTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTGCTAGAACGTTCATCTGGTTTAAGCTGGGAACCATTTGTCATGTGGCGTGCATTTCGTCAGAAAACTAATACTAAGCTCAGTCAACAACATTTGGATGTGGTTGCAATTGATTGCTTAGATTTGTGTCAGGTAGAGATTAATATCCACCAATTCTTTACTGGGTATAAAGACGGTCGTGAAGATTGGCTTGATTGGCCTCAAATATTGAAATTAAAAGATTGGCCTCCTAGTAACTTATTTGAGGAGCGTTTACCCCGCCATTGTGCTGAATTTATATCTTCTTTGCCATTTAAAGAATATGCAGATCCTTACATAGGTGCTCTTAACCTGGCTGTGAAGTTGCCCCAGGATTTTATAAAGCCTGACATGGGACCTAAAACATATATTGCGTATGGATTTGCTCAGGAGCTTGGGCGTGGTGATTCCGTGACTAAGCTTCATTGCGATATGTCTGATGCTGTAAATGTGTTGACTCATATTACTGAAGTCAAATTGAAACCTAAGTGCACTAGTGCTATTGAAAATCTGATGCGAAGCCACCTTGAGCAAGACAAAAAGGAGCTACTTGGAGATGTTGAGGACGGAGAAACTAATGTTGACATGCCTGATAATACATCTTCTATCATAAATGCTTTAGACAAGGGAAATACAAGTGAACTAGGTGATGGGAAAGTGACAATGAAAGATGAATGTGGTATATTGGTTCAGGGGGATGCTTCAGAAGGTGCACTTTGGGACATTTTTAGGAGACAAGATGTACCTAAGTTGCAGGAGTATTTAAAAAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCAGTCCTGTAAACAAGGTTATTCATCCCATCCATGATCAGACCTTTTATCTCACTGTGGAGCACAAGAAGAAGCTTAAGGAAGAGTATGGAATTGAGCCCTGGACTTTTGTCCAGAAGCTAGGAGATGCTGTTTTTATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTAAAGTCATGCATCAAGGTAGCACTTGATTTTGTTTCTCCTGAAAATCTGGGGGAGTGCTTCCGTTTGACAGAAGAGTTTCGCACACTTCCGATAAATCACAGGTCGACCGAGGATAAATTGGAGGTGAAGAAAATGACTGTGCATGCTATGATTGATGTGGTCGAAAAGTTGAAGAATGCAAGGTTAACGCCTGCTTTGAAGGTTTATTCTCGGAGGACGAGGCCCTTGGGGCATGAAGATGAAGAGAAGCCTGCTTTGAAGGTTTATTCTCGGAGGATGAGGCCCTTGGGTCATGGAGATGAAGAGAATGCAACATAG 2565 0.4148 MDDSDSGSGGDQKLNKRGPKRRRKVIKEDGSSSKAKVEETDDQNPISPEGISIPGGSYQFRKRRIVNKPEVHKINKRDSKESLMCHQCQRNDKGPVVRCTKCNRKRFCYPCLEHWYPHLKEEDVAEKCPVCRGNCNCKTCMRSDELLQKLKSKENTNEEEGDKVELSKYMLKCLLPYLKQLDEEQIIEKKIEAKRQGLSSSELKVKEAEYSKKERIFCDNCKTSIFDYHRSCTKCSFDLCLICCRELRNGQLLGGADPVELEFVLRGQGYLHGIKENKEVIENISVADANTKIRQWSRSGWHAHKDGSIPCPQSNHESNHGFLELRSIRFLCSISELVCKAEELAEAYKVAGETFDNCCSCLKLDRNTDDEYTYMRKAASREDSIDNFLYTPRAVDLQKEDLRHFQSHWSKGEPVIVSNVLERSSGLSWEPFVMWRAFRQKTNTKLSQQHLDVVAIDCLDLCQVEINIHQFFTGYKDGREDWLDWPQILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYADPYIGALNLAVKLPQDFIKPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHITEVKLKPKCTSAIENLMRSHLEQDKKELLGDVEDGETNVDMPDNTSSIINALDKGNTSELGDGKVTMKDECGILVQGDASEGALWDIFRRQDVPKLQEYLKKHFREFRHVHCSPVNKVIHPIHDQTFYLTVEHKKKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENLGECFRLTEEFRTLPINHRSTEDKLEVKKMTVHAMIDVVEKLKNARLTPALKVYSRRTRPLGHEDEEKPALKVYSRRMRPLGHGDEENAT* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1173 854 PANTHER - 13 801 - -
Lja3g1173 854 MobiDBLite consensus disorder prediction 1 57 - -
Lja3g1173 854 SMART cupin_9 504 776 IPR003347 -
Lja3g1173 854 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 13 801 IPR045109 GO:0032454|GO:0033169
Lja3g1173 854 Coils Coil 143 163 - -
Lja3g1173 854 MobiDBLite consensus disorder prediction 823 854 - -
Lja3g1173 854 MobiDBLite consensus disorder prediction 24 43 - -
Lja3g1173 854 SUPERFAMILY Clavaminate synthase-like 400 799 - -
Lja3g1173 854 Pfam JmjC domain, hydroxylase 663 759 IPR003347 -
Lja3g1173 854 ProSiteProfiles JmjC domain profile. 523 776 IPR003347 -
Lja3g1173 854 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 78 147 IPR018866 -
Lja3g1173 854 ProSiteProfiles Zinc finger RING-type profile. 85 132 IPR001841 -
Lja3g1173 854 Gene3D Cupin 391 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1173 Lja-Chr3 12199062 12206110 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja3g1173 JmjC 6.5e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1173 K15601 - gmx:100805723 1098.19