Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1172 ATGGGTTGTTGTGTCTCAACAAGTAGTAAAAGCACTTGTAGCAGCAGGAGCAATGGAGAGAGGGTCTCTCCATCTTGCTTGGAAGTTGGATTCTGTGGGCAAAAGAGAGCAACAAGGAGAACATTTTCTGATCATGTTATTTCTCTACACCATTTACCCTCCTTACCCAGCAGAATTTTCGCTAATGGAAAGAGCCGCGGGTCCTGCATATTCACGCAGCAAGGCCGCAAGGGTATTAATCAGGACGCCATGATTGTGTGGGAAGATTTCATGTCTGAAGATATGACCTTTTGTGGTGTCTTTGATGGCCATGGTCCACATGGTCATCTTGTTGCACGCAAAGTGAGGGATACCTTGCCATTGAAACTGCTTTCATTTTTGCATTCTGGTGAATCAAAGAGAAATGGGTCGGGTAAAGGTTGCTTCAAAGGGAACATAAAACCTGACAGTGGAGAGTCTGAGAATGATTGTTCTGCCGAGGATAAACTGAACTCGACATGGAGAGAAGCTTTAATGAAGGCATACAAGGCTATGGACAAAGAACTCAGGTCTCATCCAAATCTAGACTGCTTCTGTAGTGGGAGCACAGCCGTGACTATAATAAAGCAGGGTTCAAATCTGTTCATGGCCAGTATCGGGGATTCTCGAGCAATCATGGGATCCAAGGACAGCAATGACTCCATGGTGGCAGTTCAGTTGACTGTTGATTTGAAGCCTGATTTGCCAAGGGAAGCAGAAAGAATTAAGCGATGCAAAGGTAGGGTATTTGCTTTACAAGATGAGCCAGAAGTGCCGAGGGTGTGGTTGCCTTTTGATGATGCACCAGGGTTAGCAATGGCTAGAGCATTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCCATACCAGAATTTTCTCACCGGCAACTTACAGACAGAGATCAATTCATTGTAATTGCCTCAGATGGGGTCTGGGATGTTTTAAGCAATGAGGAGGTGGTTGAGATTGTATCTTCATCCCCAACGCGAGCATCAGCAGCTAGAACAGTGGTAAATTCCGCTGCTCGGGAGTGGAAACTTAAATATCCAACTTCAAGGATGGATGACTGTGCTGTTGTGTGCTTATTTCTGGATGGGAAAATGGACTCAGAATCAGATTATGATGAACAAGGCTTTTCTTCTGCAACCATCCAGAGCAACCATTCAGGCAACCCAATTGAGTCAGATGATGGACAAAAATCAGAGCCATGTTTGCAGAGGAACTTCACAGTGAGATCCTCGGAAGAAGATGAGACTAATGGAGCAGTACCTGTCGATGTTGAAGATGCAACATCATACGCTGATGATCAAAACTGGTCAGGTTTGGAGGGGGTAACTCGGGTAAACTCGCTTGTTCAACTTCCTAGATTTTCTGAGGAAAGGCCAAATTCATGA 1416 0.4492 MGCCVSTSSKSTCSSRSNGERVSPSCLEVGFCGQKRATRRTFSDHVISLHHLPSLPSRIFANGKSRGSCIFTQQGRKGINQDAMIVWEDFMSEDMTFCGVFDGHGPHGHLVARKVRDTLPLKLLSFLHSGESKRNGSGKGCFKGNIKPDSGESENDCSAEDKLNSTWREALMKAYKAMDKELRSHPNLDCFCSGSTAVTIIKQGSNLFMASIGDSRAIMGSKDSNDSMVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRQLTDRDQFIVIASDGVWDVLSNEEVVEIVSSSPTRASAARTVVNSAAREWKLKYPTSRMDDCAVVCLFLDGKMDSESDYDEQGFSSATIQSNHSGNPIESDDGQKSEPCLQRNFTVRSSEEDETNGAVPVDVEDATSYADDQNWSGLEGVTRVNSLVQLPRFSEERPNS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1172 471 SUPERFAMILY PP2C-like 62 373 IPR036457 -
Lja3g1172 471 Pfam Protein phosphatase 2C 156 345 IPR001932 -
Lja3g1172 471 PANTHER ALPHABET, ISOFORM E-RELATED 1 459 - -
Lja3g1172 471 MobiDBLite consensus disorder prediction 382 409 - -
Lja3g1172 471 SMART PP2C_4 51 369 IPR001932 -
Lja3g1172 471 MobiDBLite consensus disorder prediction 131 158 - -
Lja3g1172 471 ProSiteProfiles PPM-type phosphatase domain profile. 67 371 IPR001932 -
Lja3g1172 471 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g1172 471 Gene3D - 64 379 IPR036457 -
Lja3g1172 471 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 459 - -
Lja3g1172 471 CDD PP2Cc 66 371 IPR001932 -
Lja3g1172 471 MobiDBLite consensus disorder prediction 381 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1172 Lja-Chr3 12170775 12175154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1172 1 471 PP2C-type Phosphatase Gene Family AT1G03590 69.729 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1172 - - gmx:100813306 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1172 3 12170775 12175154 Lja3g1172 3 12170775 12175154 ECH