Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1146 ATGAGTGACTCATCCACATACAAATCATCCATGGAGTTTGACCTTGAAAACCCTTTAGAAAACCTCCAAGACCTCCACTCTGATGCTCTCTCCTCCCTCTTCCTTATTGAATCTGACCACATCCCACAACAAAGCTTCTTTCAGATTCTCAAAGCAAGAGATCTTGACATATCTTCTAGAACAGAAGCCATCTCTTTAATCTCACAGTTATCCTGCACTTGGGATCCAATTTTGTCTTACCTTGCCATCAATTATTTCGACCGGTTCCTGGTCAATCAAGGGATATTGCAACCAAAGCAATGGGTCCTCAGGCTTATTTCAATCTCATGCTTTTCTTTAGCTGCCAAGATGATGAAAACAGAGTACTCTGCTTCTGATTCCCAGGCCCTTATGTCACAATGTGATGGTGGCATGATATTTGAGAAGCAAGCAATACAGAAAATGGAAGCACTCGTTTTGGGAGCTCTAAAATGGAGAATGCGCTCGATCACCCCCTTCTCTTTTCTGGCTTTCTTCATTACACTGTTTAAGCTCAAAGACCCATCCATGGAAACTGTCCTGAAAAACCGAGCAGCTCAAATCATTTTCAAGTGCCAAAGAGAAATAAGGTTCTGGGAATTCAAGCCATCTAATGTTGCTGCATCAGCACTTCTAAGCGCTTCTCATGAGTTGTTTCCTCTTCAATATCCATGCTTCTTAGCAGCATTATCTGAATGTTCATACGTGAATAAAGAAAGCGTGCTGCAGTGCTATAGTGTGATACAAGATATGGCTACAGGTGAGGAGAATGGGTATGTTTTCAATGCGGTTCCAAGTTCAGACACACCAGTTAATGTGTTGGACCATCATTTTCTGAGTTCAGAGAGTGAAAAAACCACCGAAATCTCCATTGCTGTTTTTCCTCAGAGAGGGAAAATCACTGCATCTAGTAACGATTCAATGAGTCAGAACACTCAGATTAAACAATGCTGA 972 0.4167 MSDSSTYKSSMEFDLENPLENLQDLHSDALSSLFLIESDHIPQQSFFQILKARDLDISSRTEAISLISQLSCTWDPILSYLAINYFDRFLVNQGILQPKQWVLRLISISCFSLAAKMMKTEYSASDSQALMSQCDGGMIFEKQAIQKMEALVLGALKWRMRSITPFSFLAFFITLFKLKDPSMETVLKNRAAQIIFKCQREIRFWEFKPSNVAASALLSASHELFPLQYPCFLAALSECSYVNKESVLQCYSVIQDMATGEENGYVFNAVPSSDTPVNVLDHHFLSSESEKTTEISIAVFPQRGKITASSNDSMSQNTQIKQC* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1146 323 CDD CYCLIN 59 153 IPR013763 -
Lja3g1146 323 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 15 293 - -
Lja3g1146 323 SMART cyclin_7 61 154 IPR013763 -
Lja3g1146 323 Gene3D - 31 252 - -
Lja3g1146 323 Gene3D - 43 161 - -
Lja3g1146 323 SMART Cyclin_C_2 163 298 IPR004367 -
Lja3g1146 323 SUPERFAMILY Cyclin-like 144 259 IPR036915 -
Lja3g1146 323 Pfam Cyclin, N-terminal domain 36 160 IPR006671 -
Lja3g1146 323 SUPERFAMILY Cyclin-like 23 160 IPR036915 -
Lja3g1146 323 Pfam Cyclin, C-terminal domain 163 261 IPR004367 -
Lja3g1146 323 PANTHER CYCLINS 15 293 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1146 Lja-Chr3 11941562 11943271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1146 11 308 Core Cell Cycle Gene Families AT4G03270 45.367 4.37e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1146 K18812 - gmx:100820404 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1146 3 11941562 11943271 Lja3g1146 3 11941562 11943271 ECH